Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01788 ATGGTTTGTAACACGAACAAGAGCAACAAGAAGGAGAAAGACCTTGAGTTTTTCTTCGAGGATGATTTCAACGAAAGTGCACAACAAGATATtgaaagtgcaaagttaacgatagagagtgaaagtagcagtgaTGATGACGAGGGAAATGATACAACGCACCGTCGTCACTCTTTCACTTCTCAGCAATGGCCTCGAAGTTACAAAGAGACTACAGATGCTTACACACTTGCTGCAACTCCAAATTTTGAATCAATTCTACGAGGATCAAGTTTTGTATATTCTAGTTTTGACGATCGTTCAAAGAATAAGTTAGATATAGATGGAAAGACAACTCCTTTTCTCTCTGGTCATGAAATCGTTACCCAATCAACTTTGCCGAAACAAGGTTCAGTGCAAGCGCATTCATGTGGCGAACTTCCCATTGGTCATGGATGCAACTTCATTCAAACAGTTTTCAATGCGATTAATGTGATGGCTGGAGTTGGCATTTTGTCTACACCTTATACATTGAAAGAAGCTGGTTGGGTGAGCATGGTGCTGATGGTTCTTTTTGCAGTCATTTGTTGCTATACAGCCACCCTTATGAGATACTGTTTTGAAAGCAGAGAAGGGATCAATAGCTATCCAGATATAGGAGAGGCTGCATTTGGAAAATATGGTCGTATTATTATATCAATCATCTTGTACACTGAATTATATTCGTGTTGTGTGGAATTCATCACCTTGGAAGGAGATAACCTCACTGGACTATTTCCGGGAACATCCTTAAATTTGGGCAGTTTCCAGTTAGATTCTGTCCACATGTTTGGAATTTTGGCTGCACTTATTATTATCCCCACTGTATGGCTAAAGGATCTTCGTATAATTTCTTTAATGTCAGCTGGAGGAGTTTTTGCAACAGTGTTGATTGTTATATGTGTGTTTTGTGTTGGGACAAGTGATGGTGTTGGATTCCATCACACTGGTCAATTGGTCAATTGGAGAGGCATTCCTTTAGCAATTGGTATCCATGGTTTTTGCTTTGCAGGACACTCAGTTTTCCCTAATATTTACCAATCCATGGCTGACAAAACACAATTTACTAAAGCAGTAATATTATGTTTTGTATTGTCTGTTACAATATATGGAGGTGTTGCAATCATGGGATTCCTCATGTTTGGTGATGCCACTTTGTCTCAAATAACACTAAATATGCCACGGAGTTCATTTGCTTCCAAGGTTGCATTGTGGACAACAGTAATTAACCCATTCACTAAATATGCTTTGTTGATGAACCCATTGGCAAGGAGTCTCGAGGAGTTGCTACCAGAAAGAATATCAAGTACTTATCAATGTTTCATTCTTCTTAGAACAGCACTTGTTGTATCTACGGTTTGTGCTGCTTTTCTGATTCCTTTTTTTGGGTTTGTGATGGCTTTAATTGGCTCTCTCTTCAGTATACTTGTGTCAGTGATATTGCCAACTTTATGTTTTGTGAAAATTGTGGGGAAAAAAGCAACTTATACACAGGTTGTATTGAGCGTCGTAATTGCTGCATTTGGAGTCATTTGTGGAGTTCTTGGAACATATTCATCTGTGCTGAATATTATGAAGAGTTACGAATGA 1608 0.3769 MVCNTNKSNKKEKDLEFFFEDDFNESAQQDIESAKLTIESESSSDDDEGNDTTHRRHSFTSQQWPRSYKETTDAYTLAATPNFESILRGSSFVYSSFDDRSKNKLDIDGKTTPFLSGHEIVTQSTLPKQGSVQAHSCGELPIGHGCNFIQTVFNAINVMAGVGILSTPYTLKEAGWVSMVLMVLFAVICCYTATLMRYCFESREGINSYPDIGEAAFGKYGRIIISIILYTELYSCCVEFITLEGDNLTGLFPGTSLNLGSFQLDSVHMFGILAALIIIPTVWLKDLRIISLMSAGGVFATVLIVICVFCVGTSDGVGFHHTGQLVNWRGIPLAIGIHGFCFAGHSVFPNIYQSMADKTQFTKAVILCFVLSVTIYGGVAIMGFLMFGDATLSQITLNMPRSSFASKVALWTTVINPFTKYALLMNPLARSLEELLPERISSTYQCFILLRTALVVSTVCAAFLIPFFGFVMALIGSLFSILVSVILPTLCFVKIVGKKATYTQVVLSVVIAAFGVICGVLGTYSSVLNIMKSYE 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01788 535 PANTHER AMINO ACID TRANSPORTER AVT1A 39 532 - -
Cca06g01788 535 PANTHER OS05G0424000 PROTEIN-RELATED 39 532 - -
Cca06g01788 535 MobiDBLite consensus disorder prediction 39 55 - -
Cca06g01788 535 MobiDBLite consensus disorder prediction 29 65 - -
Cca06g01788 535 Pfam Transmembrane amino acid transporter protein 147 526 IPR013057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01788 Cca-Chr6 33212954 33224334 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01788 6 469 Amino Acid or Auxin Permease AAAP Family AT2G41190 62.630 0.0 579
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01788 K15015 - gmx:100816368 890.952