Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01780 ATGTTGGAGATTAAAAAGGAGCTCATGGATTTCAATTTTGATTCACCTCATCCAGATGGACTCCATTTGTGTCGTCTTTCTTCGCTCAATTATCGCAATAGCAATACCTTTCTTCTGGAATCAACCCCTAGTGCAAGAAAAAAAGCACAATCTAGACGTTGGACAGCGGAAGAGGACAACCTTTTGATTGATACGGTCAAGAAGCACAACGGAAGGAACTGGAAGAAAATAGCTGCATACCTCCCTGGGCGAACTGACGTCCAATGCTTGCATCGCTGGCAAAAGGTTTTAAATCCTAATCTTGTAAAGGGTTCATGGACAAAGGAGGAAGATGATTGCCTCATTGAACTAGTCAAAAAGTATGGTATCAAGAGGTGGTCCGTTATTTCCAAATACTTACCAGGTCGGATTGGAAAGGGATGCCGAGAGAGGTGGAACAATCATCTTGATCCGGCTATAAAGAAGGATGCATGGACAGAGGAGGAGGAACAAATACTTGCTTACTGTCACCAAATATATGGCACTAAGTGGTCAGAAATTGCAAGGCTTCTTCCCGGAAGGACTGACAATGCTATAAAAAATCATTGGAACTGCTCAATGAAGAAGAAATTGGATGCATCACCATTTGGGTGTGACATAAATGCTACCACTTCCAGTTTCATTGCTTCTCAAATAAAGCCAGCACATGTTTTGGTTAAAGTCGAGAGTCAAACTTTCAACGAAATGCGCAGTGTTGATAACTTTCCAACAAAATTGATTCTTCAAAATACTCCAGTAGAGGAATCTTTCTCCGAAGAAAACTGTTTTGAGGGGGAGACTCCTAAGGCCTCAAGACAAGGTGTTGAAAGCAGATTGGATAATTTACCAAATGAGATTCACCATGTTACATGTTGCAAAGACAATGCAGCCAACCTTTTTTGCACAATTAATCATATGGACTCGTTTATGGATAATTCTCCAGATATGCTTGCATCAAATTTGGATTATTTACCTCTTGCAAGTACTGTTACATACGAGGCCTGTAAATCTCGCAAACGGCAAATGGTTTCTTTTTCAGATGCAAAGTATAATTTGGGTGAGAAGAAAGGTCAAGAAGGATGGGGAAGCAACAACAAAATCAACAGTATGCGACTTGCAGATGACATACGTAATGAATATGCTTACTTTCCTGTTGAACATCCCCCGGTGGAAGATTTGGTGCTCCCCACAGTATTCAGTGGATGTCTAAGTCCAAAAACACACATGGCATGTGCAGATAATAACGGTTGTACTCCCCCATCGTCTATACTCAGGAATTACATAGGCGATATCAGCCCTGAAACTGTGCTAAGAAGCTTAGCAATGACCTATCAGAATGTTCCTTCTATTATAAGGAAAAGGACTCCTTGGAAGGCAACCTATCGTGACAGTCACCAAAAACCTTCCAGAGTCATCGTCTGTACTCCTGAAACGGAACGTGTTACTACTGGCCTAGATAATTTAGAACTGAATAAGGGGTTTATTTCATTCCTTCGTTAA 1518 0.4104 MLEIKKELMDFNFDSPHPDGLHLCRLSSLNYRNSNTFLLESTPSARKKAQSRRWTAEEDNLLIDTVKKHNGRNWKKIAAYLPGRTDVQCLHRWQKVLNPNLVKGSWTKEEDDCLIELVKKYGIKRWSVISKYLPGRIGKGCRERWNNHLDPAIKKDAWTEEEEQILAYCHQIYGTKWSEIARLLPGRTDNAIKNHWNCSMKKKLDASPFGCDINATTSSFIASQIKPAHVLVKVESQTFNEMRSVDNFPTKLILQNTPVEESFSEENCFEGETPKASRQGVESRLDNLPNEIHHVTCCKDNAANLFCTINHMDSFMDNSPDMLASNLDYLPLASTVTYEACKSRKRQMVSFSDAKYNLGEKKGQEGWGSNNKINSMRLADDIRNEYAYFPVEHPPVEDLVLPTVFSGCLSPKTHMACADNNGCTPPSSILRNYIGDISPETVLRSLAMTYQNVPSIIRKRTPWKATYRDSHQKPSRVIVCTPETERVTTGLDNLELNKGFISFLR 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01780 505 Gene3D - 50 102 - -
Cca06g01780 505 ProSiteProfiles Myb-like domain profile. 98 149 IPR001005 -
Cca06g01780 505 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 98 153 IPR017930 -
Cca06g01780 505 CDD SANT 157 197 IPR001005 -
Cca06g01780 505 ProSiteProfiles Myb-like domain profile. 150 200 IPR001005 -
Cca06g01780 505 Gene3D - 156 219 - -
Cca06g01780 505 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 46 97 IPR017930 -
Cca06g01780 505 PANTHER MYB PROTEIN-RELATED 53 236 - -
Cca06g01780 505 SUPERFAMILY Homeodomain-like 49 104 IPR009057 -
Cca06g01780 505 CDD SANT 105 149 IPR001005 -
Cca06g01780 505 CDD SANT 53 97 IPR001005 -
Cca06g01780 505 Gene3D - 103 154 - -
Cca06g01780 505 Pfam Myb-like DNA-binding domain 103 149 IPR001005 -
Cca06g01780 505 Pfam Myb-like DNA-binding domain 53 97 IPR001005 -
Cca06g01780 505 Pfam Myb-like DNA-binding domain 155 197 IPR001005 -
Cca06g01780 505 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 154 204 IPR017930 -
Cca06g01780 505 ProSiteProfiles Myb-like domain profile. 46 97 IPR001005 -
Cca06g01780 505 SMART sant 154 202 IPR001005 -
Cca06g01780 505 SMART sant 102 151 IPR001005 -
Cca06g01780 505 SMART sant 50 99 IPR001005 -
Cca06g01780 505 PANTHER TRANSCRIPTION REPRESSOR MYB5 53 236 - -
Cca06g01780 505 SUPERFAMILY Homeodomain-like 100 196 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01780 Cca-Chr6 33118917 33122592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01780 54 221 MYB Transcription Factor Family AT5G02320 64.286 2.37e-73 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca06g01780 Myb_DNA-binding 2.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01780 - - aprc:113869477 655.981