Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01779 ATGGCGCCATTACCAGCCGAGCAAACCGGTGAATCAGCGCCCTCCGACTCCCAGAGATCCATTCCCAcgccgtttctcacaaagacctaccagctcgtcgacgatcccgccgcggatgacctaatttcctggaacgaagatggcaccagcttcatcgtttggcgacccgccgaattcgcacgggatttgcttcccaagtacttcaagcacaacaacttttctagtttcgtccgtcagcttaacacctatGGATTTCGGAAGGTTGTCCCTGACCGTTGGGAATTCGCTAACGACTGCTTCCGGCGAGGCGAGAGAGGTCTTCTCCGCGACATAcagcgccggaaaatattgccggcaccggcggcggcagcagtaaccacagcgaacgcggtaacggtggcggtggcggcaccggcggtgAGAACGGTGTCCCCGACGACTTCCGGCGACGAACAGGTACTGTCCTCGAACTCATCTCCGATTGGTGGGAGTGGGAATAATAATAATACAGTGCACCGCACCACGAGTTGCACCACTGCGCCCGAGCTGTTAGAAGAGAATGAAAGGCTTAGGAAAGAGAACATGCAACTGAGTCACGAGTTGGGTCAATTGAAGGGCTTGTGTAATAACATACTCTCTTTGATGACCAATTATGCTTCTGGTTTTAGCCGCCAGCAGTTAGAATCGTCTACCAGCGCTGCCAGGACCATGCCTGTGCCGGAAGGGAAGGCGCTCGACCTTTTGCCTGCCAAGCATGTTTCCTCAGCTGAGGACGCCCTGCATGTTGCTGCCGCCGCGCCCTTTGCCACGCCGAATGCTGAGGTTCCCAAGCTCTTTGGGGTTTCCATTGGCCTCAAACGCTGTAGGACAGAGTGCGATAATGAACCCGAGGGAGAAGGACAGAATCAAACGCAAACGCACACGCACACGCGACTACAAACACAATCACAATCACAATCGTCGCAAGAACCTGATGGCGGTTCAGATGTGAAATCTGAACCGCTTGATGGCGATGACTCGGATGATCAGGATCCACGTTGGCTTGAGCTTGGGAAATAA 1059 0.3985 MAPLPAEQTGESAPSDSQRSIPTPFLTKTYQLVDDPAADDLISWNEDGTSFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFANDCFRRGERGLLRDIQRRKILPAPAAAAVTTANAVTVAVAAPAVRTVSPTTSGDEQVLSSNSSPIGGSGNNNNTVHRTTSCTTAPELLEENERLRKENMQLSHELGQLKGLCNNILSLMTNYASGFSRQQLESSTSAARTMPVPEGKALDLLPAKHVSSAEDALHVAAAAPFATPNAEVPKLFGVSIGLKRCRTECDNEPEGEGQNQTQTHTHTRLQTQSQSQSSQEPDGGSDVKSEPLDGDDSDDQDPRWLELGK 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01779 352 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca06g01779 352 MobiDBLite consensus disorder prediction 145 181 - -
Cca06g01779 352 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 7 326 IPR027725 -
Cca06g01779 352 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca06g01779 352 MobiDBLite consensus disorder prediction 297 327 - -
Cca06g01779 352 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca06g01779 352 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
Cca06g01779 352 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca06g01779 352 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca06g01779 352 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca06g01779 352 Coils Coil 180 207 - -
Cca06g01779 352 MobiDBLite consensus disorder prediction 1 22 - -
Cca06g01779 352 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-2B 7 326 - -
Cca06g01779 352 MobiDBLite consensus disorder prediction 292 352 - -
Cca06g01779 352 Gene3D - 17 115 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01779 Cca-Chr6 33113577 33115791 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01779 16 352 HSF AT4G11660 52.436 1.26e-103 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Cca06g01779 HSF_DNA-bind 2.8e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01779 K09419 - gmx:100791020 518.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01779 06 33113577 33115791 Cca06g01779 06 33113577 33115791 ECH