Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01777 ATGGCCACCACCCGTTCCTCCGAGGACATAGTTGATTCCACGCCGCTGCTCGCCAATTCCGGCGGCTCCACCGACGACCTCACCTCCGGCCGCCGATTCGCACGGCGCCAGCGGCTCCGGCAGGCGGTGCGGTTCCTCCAGCAGGCCAGCGGGCGCCGCATGATGCGCGAGCCGTCGATGCTGGTCCGGGAGGCGGCGGCAGAGCAACTGGAGGAGCGGCAGGGCGATTGGGCGTATTCGAAGCCGGTGGTTGTTCTCGACATCGTTTGGAACTTGGCGTTCGTTATCGTGGCGGGGACCGTGTTGGTGCTGAGCGTGAGCGAAGCTCCGGGAATGCCTCTGAGGCTGTGGATTGTGGGGTACGCTTTGCAATGCTTCCTCCACATGGTTTGCGTTTGCGTCGAGTATAGGAGAAGGAGGAGGCACCAACGTGCTGCGTCGTTGAACTCTGTGTCAGCGCAAGACAGGGTTGGTGACAGCAGTGGGAATTTGAGTGTGTCTTCCAGGGAGGGTTCTGCTTCTGGCTCTGCGCAGTATGTGTCGTTGGGGCAATTCGATGAGGAGGGTACTAGCAGTGTTGCAAAGCATTTGGAATCAGCCAATACTATGTTTTCATTTGTTTGGTGGATTATTGGATTCTACTGGGTATCTGCTGGTGGTCAAGCATTAGCCCAAGAGTCTCCTCAGCTCTACTGGCTATGTATAATCTTCCTTGGTTTTGATGTTTTCTTTGTCGTTTTCTGTGTTGCACTGGCGTGTATCATTGGTATTGCTGTTTGTTGTTGCCTTCCATGCATCATTGCACTTCTTTATGCAGTTGCAGACCAGGAAGGGGCATCGAAGGAGGACATTGAACAGTTGTCAAAATTTAAATTCCGAAGAATTGAAAGTAATGAGAAGCTTAATGGTACTATACAAGGACCTGTAGGAGGAATAATGACTGAATGCCAGGCTGATTCACCTATTGAACATGTTCTTGCTGAGGAGGATGCGGAATGTTGCATCTGCCTTTCTTCTTATGACAATGGGGTTGAGCTAAGAGAACTTCCTTGTGGTCACCATTTTCACTGTGCCTGTGTGGATAAATGGCTGTATATTAATGCTACATGCCCCCTCTGCAAGTATAACATCTTAAAAAGTAGCAACCTCAGTCAAGAGGAAGTGTAG 1167 0.5159 MATTRSSEDIVDSTPLLANSGGSTDDLTSGRRFARRQRLRQAVRFLQQASGRRMMREPSMLVREAAAEQLEERQGDWAYSKPVVVLDIVWNLAFVIVAGTVLVLSVSEAPGMPLRLWIVGYALQCFLHMVCVCVEYRRRRRHQRAASLNSVSAQDRVGDSSGNLSVSSREGSASGSAQYVSLGQFDEEGTSSVAKHLESANTMFSFVWWIIGFYWVSAGGQALAQESPQLYWLCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIALLYAVADQEGASKEDIEQLSKFKFRRIESNEKLNGTIQGPVGGIMTECQADSPIEHVLAEEDAECCICLSSYDNGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSNLSQEEV 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01777 388 ProSiteProfiles Zinc finger RING-type profile. 333 374 IPR001841 -
Cca06g01777 388 Pfam Ring finger domain 332 374 IPR001841 -
Cca06g01777 388 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 3 388 - -
Cca06g01777 388 MobiDBLite consensus disorder prediction 1 27 - -
Cca06g01777 388 CDD RING-H2_RNF111_like 332 376 - -
Cca06g01777 388 PANTHER TARGET OF ERK KINASE MPK-1 3 388 - -
Cca06g01777 388 SUPERFAMILY RING/U-box 323 380 - -
Cca06g01777 388 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 319 387 IPR013083 -
Cca06g01777 388 SMART ring_2 333 373 IPR001841 -
Cca06g01777 388 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01777 Cca-Chr6 33095329 33100470 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01777 13 381 C3H Transcription Factor Family AT1G68070 48.118 8.19e-118 344
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01777 - - gmx:100790497 650.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01709 11 41511885 41517612 Cca06g01777 06 33095329 33100470 PCT