Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01776 ATGGGTAAGGCATCGAAATGGTTTCGCGGCCTTCTCGGTCTCAGAAGAGCGGACTCGCCGTCAGCCACCGCTCCCAAGGAGAAACGGCGCTGGAGCTTCGTCAAGTCTTACAGAGAGAAGGACCGTAATGCCACCGTCCAACACCACTCCTCGGATTCGGAACACATTCCCGACATCGCCGGAGAAGAATACGCGGCCATTAAGATTCAAGCCGCCTTTCGAGGCTACTTGGCAAGGAAAGCCCTTCGAGCGTTAAAAGGATTGGTGAAACTACAGGCATTGGTGAGAGGTCATATTGAAAGGAAGCGCACAGCAGAGTGGCTTCAAAGAGTGCAAGCACTCCTACGTGTGCAGGCCCAAATCCGGGCTGCCCGGGCCCAAATTTTTCACTCCCCCTATTCCAATGCAAAGTCTTCTTCACTTGCCCACCTCTACGGTCCAGCAACACCAGACAAATTTGAAAGCCCCATCAGATCCGAGAGCATGAAATATGATCAGTCACCATCAGTACTTAAGAGAAACAGCTCCAAATCCCGTATACACAATGGCAACCAAGAGAAAAGTGGGAACAGATCAGAAAGTCGTGTTGAGGAACCACCATGGAATCAACGAAGATCATGGACAAGAGCTTGTAGCATGGATGAAGAAAGAAGTCTCAGGATTTTAGAACTTGATTCTGTAAAACCACACATGACATCAAAACGTAGAAACCTCTTTTACTCCCCTAGCCAAGATTTGGTTTCGGATCATCACAATCAGTGTTTGACCTCCACAATATCTTATCAATCGGGTCAAAGTCAATCTTCCTTTGAAGTTCAGTCTTATAGCCCTCTAAAAGTCAACGGGGTTGAGGATGCTGGCGATAGTTATAGTCCAAAAACTTTATCTGCCTCTTCTAAAGATGGTGGCCCCAAAATAGGTCCCTTAACTCCTACAAGGAGTGATGGCTCAAGAAGCTACCTAAGTGGTTATTCTGAGTGTGAGTATCCAAGTTACATGGCATACACCGAGTCTTCAAAGGCAAAGGTAAGGTCTCTGAGTGCTCCTAAGCAGAGGCCTCAGTATGAGAGGTCTACTTCCTCTAACAGGTACTCGCTGCATGCATTTGCTGAGCCAAAATTGGCCTCACAAAGGGAAAAGGTATCTGCATTACACGCAAACTTCACTAGCAAAGCTTACCCTGGTTCTGGTCGTTTGGACAAGCTTGGTTTGCCTGTGGGGTATAGATACTGA 1233 0.4745 MGKASKWFRGLLGLRRADSPSATAPKEKRRWSFVKSYREKDRNATVQHHSSDSEHIPDIAGEEYAAIKIQAAFRGYLARKALRALKGLVKLQALVRGHIERKRTAEWLQRVQALLRVQAQIRAARAQIFHSPYSNAKSSSLAHLYGPATPDKFESPIRSESMKYDQSPSVLKRNSSKSRIHNGNQEKSGNRSESRVEEPPWNQRRSWTRACSMDEERSLRILELDSVKPHMTSKRRNLFYSPSQDLVSDHHNQCLTSTISYQSGQSQSSFEVQSYSPLKVNGVEDAGDSYSPKTLSASSKDGGPKIGPLTPTRSDGSRSYLSGYSECEYPSYMAYTESSKAKVRSLSAPKQRPQYERSTSSNRYSLHAFAEPKLASQREKVSALHANFTSKAYPGSGRLDKLGLPVGYRY 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01776 410 Pfam Protein of unknown function (DUF4005) 301 374 IPR025064 -
Cca06g01776 410 PANTHER CALMODULIN BINDING PROTEIN IQD22 62 405 - -
Cca06g01776 410 MobiDBLite consensus disorder prediction 184 202 - -
Cca06g01776 410 Pfam IQ calmodulin-binding motif 89 103 IPR000048 GO:0005515
Cca06g01776 410 Pfam IQ calmodulin-binding motif 65 83 IPR000048 GO:0005515
Cca06g01776 410 ProSiteProfiles IQ motif profile. 62 90 IPR000048 GO:0005515
Cca06g01776 410 MobiDBLite consensus disorder prediction 152 206 - -
Cca06g01776 410 Gene3D - 6 88 - -
Cca06g01776 410 ProSiteProfiles IQ motif profile. 86 113 IPR000048 GO:0005515
Cca06g01776 410 PANTHER IQ-DOMAIN 5-RELATED 62 405 - -
Cca06g01776 410 MobiDBLite consensus disorder prediction 283 317 - -
Cca06g01776 410 SMART iq_5 61 83 IPR000048 GO:0005515
Cca06g01776 410 SMART iq_5 84 105 IPR000048 GO:0005515
Cca06g01776 410 MobiDBLite consensus disorder prediction 160 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01776 Cca-Chr6 33085960 33089276 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01776 63 410 IQD Protein Family AT4G23060 42.222 1.70e-53 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01776 - - gmx:100814244 488.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01776 06 33085960 33089276 Cca06g01776 06 33085960 33089276 ECH