LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca06g01775	ATGGCAATGGTAACAAAAACTCCTCTTTATGAGGATGGTGAGCTTGTTGGTGTTATAACTGTTTCAAGTGATTCAGCTATTTTAAACTCTAGAAATTCAGAAAATCAAAGGACTTACCAATCTGGTAACAATGGCCTACCTGGAGTACAGAGGTTAAACTTCAAAAGGATTCAGTGGCCTCCACGACCAACGATTGCACCAATGCCACAGATTGCTTCATGTGTTTCCAATCTGGCATCAAAGTTTCTCCCAGCGCATACTGATAACACAGTTTCCAGGAATACTTCAACAGATGTAGAAGATGAAAAACTAGAGAAGCGTAACATACATGAAACAAAACCTCATTCCAGACATCACCATAAAGAAAACACAACTTTCACAGAGGCCTCAGAGAAGGATGAGTCTACTACTGAATTTGGTCAACCTTCTAAAATTGCAGCCAGAGTCCTTGCCAAGCTTCAAATTGGGGCACGTGCAAAATGTGAGAAGGATAATGGAAGTATCAAGAATAATTGTACAGCTGATAATTCAGGAAGCAATAGAGTGAATAATGAAAATGATTCATCTGGAGGTTTAGTGTCATTCACACCATATCAGGATGTTGCTAATGGAGCAGATAAAGAAGAAAATCTTCATAAATGTAATTCTTTATTTGCAATGAAGAGAGCAGATACAAAAGTTTGCTCATACAGAGCATCCAATGTTTTCAAAGATAGTTCTGGTAAAACTTTGTCAGGGGAGTGGTGTGAATGTTTTGGTTCTCCCATTCCCCAAGATCCATTGTTAAGATTACGCTGTCAATTTGATCAGAAGAAATTGGAGCCAGAGGCTACAAATATGGTGGCAGGAGATGAAGTGCAAAAGCAGCAAGAAGGGTCGCAATTGCCAAGTTCGAGGGAGAGTAACGGCAGCCATGAAAGTTCATCAAGCAAAGGGGATAACGAGTCAAACTCTGTTTTGGAGTGTGAAATCCATTGGGAAGACCTTCAATTAAGGGAGGAGATTGGACAAGGTTCTTATGCTGCTGTTTATCATGGAATTTGGAATGGATCGGATGTAGCAGTCAAAGTTTATTTTGGGAACGGATACACAGAAAATACTTTACAAGACTACAGAAAAGAGATTGATATAATGAAGAGATTGAGACACCCTAATGTATTGCTTTTCATGGGAGCAGTATATTCACAGGAAAGGCTTGCCATTGTGACAGAGTTATTACCTAGGGGAAGCCTTTTTAAAAACCTGCACAGTAACAATCAGACATTAGACATCAGAAGGCGTCTAAGGATGGCTCTTGATGTTGCTAGAGGAATGAATTATCTTCATCACAGAAATCCACCAATAGTGCATAGAGACCTGAAGTCTTCCAACCTTCTTGTAGATAAAAACTGGACTGTAAAGGTCGGAGACTTTGGCCTGTCTAGGTTAAAGGATGCAACTTTATTGACTACAAAATCTGGGAGAGGCACCCCTCAGTGGATGTCCCCTGAAGTCCTCAGAAATGAACCTTCAAATGAGAAGTCTGATGTGTTCAGTTTTGGTGTCATCCTCTGGGAACTAATGACTCAGTCTATCCCATGGAAAAACTTGAATTCCTTGCAGGTTGTTGGAGTCGTAGGCTTTATGGATAGACGACTAGACATCCCGGAGGGGCTTGATCCCCATATTGCATCGATCATAAATGACTGCTGGCGAAGTGATCCAGAGCAACGCCCATCTTTTGAAGAGCTGATACAGAGAATGATGTTCCTTGTCAACAGAGTAACAGCAGTGTCAATTAAAAGAATTTCAGAATCTTAA	1800	0.4056	MAMVTKTPLYEDGELVGVITVSSDSAILNSRNSENQRTYQSGNNGLPGVQRLNFKRIQWPPRPTIAPMPQIASCVSNLASKFLPAHTDNTVSRNTSTDVEDEKLEKRNIHETKPHSRHHHKENTTFTEASEKDESTTEFGQPSKIAARVLAKLQIGARAKCEKDNGSIKNNCTADNSGSNRVNNENDSSGGLVSFTPYQDVANGADKEENLHKCNSLFAMKRADTKVCSYRASNVFKDSSGKTLSGEWCECFGSPIPQDPLLRLRCQFDQKKLEPEATNMVAGDEVQKQQEGSQLPSSRESNGSHESSSSKGDNESNSVLECEIHWEDLQLREEIGQGSYAAVYHGIWNGSDVAVKVYFGNGYTENTLQDYRKEIDIMKRLRHPNVLLFMGAVYSQERLAIVTELLPRGSLFKNLHSNNQTLDIRRRLRMALDVARGMNYLHHRNPPIVHRDLKSSNLLVDKNWTVKVGDFGLSRLKDATLLTTKSGRGTPQWMSPEVLRNEPSNEKSDVFSFGVILWELMTQSIPWKNLNSLQVVGVVGFMDRRLDIPEGLDPHIASIINDCWRSDPEQRPSFEELIQRMMFLVNRVTAVSIKRISES	599

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Cca06g01775	599	MobiDBLite	consensus disorder prediction	121	138	-	-
Cca06g01775	599	SUPERFAMILY	Protein kinase-like (PK-like)	317	588	IPR011009	-
Cca06g01775	599	PANTHER	U-BOX DOMAIN-CONTAINING PROTEIN 53-RELATED	1	585	-	-
Cca06g01775	599	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	448	460	IPR008271	GO:0004672\|GO:0006468
Cca06g01775	599	PRINTS	Tyrosine kinase catalytic domain signature	552	574	IPR001245	GO:0004672\|GO:0006468
Cca06g01775	599	PRINTS	Tyrosine kinase catalytic domain signature	442	460	IPR001245	GO:0004672\|GO:0006468
Cca06g01775	599	PRINTS	Tyrosine kinase catalytic domain signature	508	530	IPR001245	GO:0004672\|GO:0006468
Cca06g01775	599	PRINTS	Tyrosine kinase catalytic domain signature	403	416	IPR001245	GO:0004672\|GO:0006468
Cca06g01775	599	PRINTS	Tyrosine kinase catalytic domain signature	489	499	IPR001245	GO:0004672\|GO:0006468
Cca06g01775	599	PANTHER	SERINE-THREONINE PROTEIN KINASE	1	585	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca06g01775	Cca-Chr6	33070876	33077938	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca06g01775	1	587	MAP Kinase Kinase Kinase	AT4G23050	46.612	3.60e-162	479

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL_CTR1-DRK-2	Cca06g01775		PK_Tyr_Ser-Thr	7e-68	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca06g01775	-		-	gmx:100813707	1063.91

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