Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01766 ATGAACAATTTGAAATCAGCACTGGAGGAGTCAGAAGCGTCGTATTCGTCGGAAACCAGTTCAATTCGGAGCGCTAGCGGCGCCCACTCTGACGACCAAGTCATACTCGCTTCAGCGCGGCCAAAGAAGCGAGCGGGGCGGAGAGTGTTCAAGGAGACACGACACCCCGTGTACCGAGGAGTGCGTCGCAGGAACAACAACAAGTGGGTCTGCGAGATGCGTGTGCCCAACAAAAACTCCCGGATTTGGCTCGGAACCTACGCCACGCCCGAAATCGCAGCGCGCGCGCACGACGTCGCCGCCCTTGCGCTCCGGGGAAAGTCCGCCTGCCTCAACTTCGCCGACTCCGTCTGGCGCCTGGCGGTCCCGGCCACCACCGACGCGGAGGAGATTCGAAAAGCGGCGGTGGAGGCTGCTGAGTCATTTGCGGCTGAGGACGTTCATGAGTGCCAGCAACAGCAGCAGCAACTGCAACAAGAGGGAATGCATGTGGATGAGGTTCATGAGTTGCATGATTTGCTTTTGAGCATCGCAAACGAGCCTTTGATGTCTCCTCCTCCTTCTGCAAGAGATCATGGAAGGGACTGGAATGACGTCCACATTTTTGATGCTGAAGTCTCCTTATGGAACTTTTCAATTTGA 642 0.5654 MNNLKSALEESEASYSSETSSIRSASGAHSDDQVILASARPKKRAGRRVFKETRHPVYRGVRRRNNNKWVCEMRVPNKNSRIWLGTYATPEIAARAHDVAALALRGKSACLNFADSVWRLAVPATTDAEEIRKAAVEAAESFAAEDVHECQQQQQQLQQEGMHVDEVHELHDLLLSIANEPLMSPPPSARDHGRDWNDVHIFDAEVSLWNFSI 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01766 213 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1 213 - -
Cca06g01766 213 SUPERFAMILY DNA-binding domain 57 116 IPR016177 GO:0003677
Cca06g01766 213 ProSiteProfiles AP2/ERF domain profile. 57 114 IPR001471 GO:0003700|GO:0006355
Cca06g01766 213 MobiDBLite consensus disorder prediction 1 47 - -
Cca06g01766 213 CDD AP2 58 116 IPR001471 GO:0003700|GO:0006355
Cca06g01766 213 Gene3D AP2/ERF domain 57 115 IPR036955 GO:0003700|GO:0006355
Cca06g01766 213 SMART rav1_2 57 120 IPR001471 GO:0003700|GO:0006355
Cca06g01766 213 Pfam AP2 domain 56 106 IPR001471 GO:0003700|GO:0006355
Cca06g01766 213 MobiDBLite consensus disorder prediction 1 28 - -
Cca06g01766 213 PRINTS Ethylene responsive element binding protein signature 58 69 IPR001471 GO:0003700|GO:0006355
Cca06g01766 213 PRINTS Ethylene responsive element binding protein signature 80 96 IPR001471 GO:0003700|GO:0006355
Cca06g01766 213 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 1 213 IPR045277 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01766 Cca-Chr6 32976608 32977504 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01766 30 211 AP2-EREBP Transcription Factor Family AT1G12610 46.411 2.67e-59 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca06g01766 AP2 3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01766 - - gmx:100789097 281.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01766 06 32976608 32977504 Cca06g01766 06 32976608 32977504 ECH
Cca02g02295 02 43592153 43593381 Cca06g01766 06 32976608 32977504 ECH
Cca11g01697 11 41326896 41327919 Cca06g01766 06 32976608 32977504 PCT