Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01757 ATGGCTCATTTGGTTTATGATGAAACTCCCTCTTTTGGAGCTGCAAACCATGGACAGGCTCAACAACTTATTCCGTTTCAAACCACTTCGAATTCCTTAAGGATCCTTCTCTTGCATGGAAACTTGGAAATATGGATCTACCACGCCAGAAACCTTCCCAACATGGACGTGTTTCACAAGACACCGGGAGAAATGGTTTCCATGTTATCTCGAAAACTTGGCGGCAAAAGCGAAAGTCGTAAGTCCAAAAGTGGAACCAGTGATCCATATGTTACGGTTTCTGTGGCTGGTGCTGTCATTGCCAGAACTTTTGTCATCAACGACGATGAAAACCCTGTGTGGACGCAACACTTCAACGTCCCCGTTGCACATCATGCTTCTGAAGTCCACTTTGTTGTTAAGGACTGTGATATTTTGGGTTCTGAGGTTATTGGAGCCGTGGGGATTCCAGTGGAACAGTTATGTGGGGGTGCAAAAGTTGAAGGCTTTTTCCCCATCCTTAACTCTAGCGGAAAACCCTGCAAGGATGGATCAGTGTTGAGTTTATCCATTCAGTACACCCCTGTTCAAAATGTGCCTCTTTATATCGATGGAGTAGGTGCTGGTCCTGATTATGAAGGGGTACCTGGTACCTATTTTCCCCTGAGGAAAGGTGGAAATGTTACTCTTTATCAGGATGCTCATGTTCATGAAGGTTGCCTTCCCAGTTTGGAGATGGATGGTGATGTGAATTATGAGCATAGAAGTTGTTGGCATGACATCTATGATGCAATAAGTCAGGCTCGTCGATTGGTTTATATTGTGGGGTGGTCTGTGTACTATAATGTTAGTCTCATTCGGGATAGGGATGATGGAAAGGGTTACACTTTAGGTGAACTTCTCAAAGCTAAATCACAGGAAGGTGTCCGAGTGCTGCTCCTTGTGTGGGATGATCCCACTTCTAGAAGCATGCTTGGATATAAAACGGTTGGACTTATGAACACTCATGATGAGGACACTCGCCGATTTTTCAAGCACTCTTCTGTGCGTGTGCTTCTTTGCCCTCGATCTGGTGGAAAAGGACACAGCTGGGTCAAAAAGCAGGAAGCTGGAACAATTTATACCCATCATCAGAAGACTGTCATTGTAGATGCAGATGCAGGTGAGAATAAAAGAAAGATTATAGCTTTCATCGGAGGTCTTGATTTATGTGTGGGTCGATATGATACCCCAAACCATCCCATCTTTAGGACTTTGCAGACAACACACAAACATGACTTTCATAATCCAAACTATGAGGGGTCTGTTACTGGTTGTCCAAGACAACCATGGCATGATTTGCATTCACAAGTTGATGGTCCAGCAGCATATGACATCCTCACCAATTTTGAGGAGCGTTGGTTAAGGGCATTAAAAATACATAAACTTCAAAAGATGAAAGGTTCACATGACGATTCCTTACTTAAAATTGATAGAATCCCTGACATTGTTGGCATTGATGAAGTTCCTTGCCTAGATGAAGATAACCAGGAGACATGGCATGTCCAGGTCTTCCGTTCAATTGATTCCAATTCTGTGAAAGGATTTCCAAAGGAACCAACAGATGCCATAAGAATGAACTTGGTTTGTGGAAAGAATGTGATGATAGACATGAGCATACATTCTGCGTATGTCAAGGCAATTCGAGCAGCCCAAAAGTTCATCTATATCGAGAACCAATACTTTATTGGCTCATCATACAATTGGGATACTTACAAAGATCTTGGTGCAAACAACTTAATTCCAATGGAAATTGCATTGAAAATAGCCGAAAAAATCAAACAAAATGAGAGATTCTCTGTGTATATTGTCATTCCTATGTGGCCTGAAGGTGTACCTACAAGTACAGCTACTCAGCGGATTCTCTTTTGGCAGTACAAAACAATGGAAATGATGTATGAAACGATTTACAAGGCCTTACAAGAGGCCGGGCTTGACAATGAGTATGAACCACAGGACTACTTGAATTTCTTTTGCCTCGGTAATCGTGAGATCCCTGACGATGGAAATGCTTCAAATGTTGCAAATCCTACTGGAGATAGGCCTCAGAAACTCACTAAAAAGAACCGGAGATTCATGATTTATGTTCATTCAAAAGGAATGATAGTGGATGATGAATACGTGTTACTGGGGTCTGCAAACATAAACCAACGATCCTTGGAAGGCACCAGAGACACAGAGATAGCAATGGGAGCATATCAGCCTAATCATACTTGGGCAATGAAGCAATCTAAACCTAGTGGGCAGGTGTATGGTTATAGAATGTCACTATGGAGCGAACATATAGGAGGCGTAGAAGAATGTTTTGAGGAACCAGAGAGCCTTGAATGTGTAAGACGAATAAGGTCATTGAGTGAGTCTAACTGGAGACAATACATGGCTGAAGAGGTAACTGAAATGGAAAGCCATCTGTTAAAATATCCTCTTGAAGTTGATTCAAAAGGTAAGGTGAATCCTATTCTTGGCTGTGAGACATTCCCAGACGTCGGTGGCAACATAAGTGGCACTTTTACTCTGCTCAAAGAAAATCTCACTATCTGA 2559 0.4232 MAHLVYDETPSFGAANHGQAQQLIPFQTTSNSLRILLLHGNLEIWIYHARNLPNMDVFHKTPGEMVSMLSRKLGGKSESRKSKSGTSDPYVTVSVAGAVIARTFVINDDENPVWTQHFNVPVAHHASEVHFVVKDCDILGSEVIGAVGIPVEQLCGGAKVEGFFPILNSSGKPCKDGSVLSLSIQYTPVQNVPLYIDGVGAGPDYEGVPGTYFPLRKGGNVTLYQDAHVHEGCLPSLEMDGDVNYEHRSCWHDIYDAISQARRLVYIVGWSVYYNVSLIRDRDDGKGYTLGELLKAKSQEGVRVLLLVWDDPTSRSMLGYKTVGLMNTHDEDTRRFFKHSSVRVLLCPRSGGKGHSWVKKQEAGTIYTHHQKTVIVDADAGENKRKIIAFIGGLDLCVGRYDTPNHPIFRTLQTTHKHDFHNPNYEGSVTGCPRQPWHDLHSQVDGPAAYDILTNFEERWLRALKIHKLQKMKGSHDDSLLKIDRIPDIVGIDEVPCLDEDNQETWHVQVFRSIDSNSVKGFPKEPTDAIRMNLVCGKNVMIDMSIHSAYVKAIRAAQKFIYIENQYFIGSSYNWDTYKDLGANNLIPMEIALKIAEKIKQNERFSVYIVIPMWPEGVPTSTATQRILFWQYKTMEMMYETIYKALQEAGLDNEYEPQDYLNFFCLGNREIPDDGNASNVANPTGDRPQKLTKKNRRFMIYVHSKGMIVDDEYVLLGSANINQRSLEGTRDTEIAMGAYQPNHTWAMKQSKPSGQVYGYRMSLWSEHIGGVEECFEEPESLECVRRIRSLSESNWRQYMAEEVTEMESHLLKYPLEVDSKGKVNPILGCETFPDVGGNISGTFTLLKENLTI 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01757 852 Gene3D Endonuclease Chain A 236 485 - -
Cca06g01757 852 SMART pld_4 365 400 IPR001736 GO:0003824
Cca06g01757 852 SMART pld_4 698 725 IPR001736 GO:0003824
Cca06g01757 852 Gene3D C2 domain 35 176 IPR035892 -
Cca06g01757 852 PANTHER PHOSPHOLIPASE D BETA 1-LIKE 8 852 - -
Cca06g01757 852 SUPERFAMILY Phospholipase D/nuclease 209 466 - -
Cca06g01757 852 Pfam Phospholipase D C terminal 772 842 IPR024632 -
Cca06g01757 852 SUPERFAMILY Phospholipase D/nuclease 534 781 - -
Cca06g01757 852 SMART C2_3c 41 163 IPR000008 -
Cca06g01757 852 CDD C2_plant_PLD 36 187 - -
Cca06g01757 852 Pfam C2 domain 40 166 IPR000008 -
Cca06g01757 852 ProSiteProfiles C2 domain profile. 20 164 IPR000008 -
Cca06g01757 852 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 698 725 IPR001736 GO:0003824
Cca06g01757 852 PIRSF PLD_plant 27 852 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Cca06g01757 852 Pfam Phospholipase D Active site motif 366 400 IPR001736 GO:0003824
Cca06g01757 852 Pfam Phospholipase D Active site motif 699 725 IPR001736 GO:0003824
Cca06g01757 852 PANTHER PHOSPHOLIPASE D 8 852 IPR015679 -
Cca06g01757 852 Gene3D Endonuclease Chain A 493 756 - -
Cca06g01757 852 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 38 189 IPR035892 -
Cca06g01757 852 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 365 400 IPR001736 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01757 Cca-Chr6 32853970 32859706 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01757 32 852 Phospholipase D Gene Family (Wang group) AT2G42010 68.396 0.0 1250
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01757 K01115 - gmx:100786241 1534.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01757 06 32853970 32859706 Cca06g01757 06 32853970 32859706 ECH