Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01756 ATGCAAGAACCCACCCTCCGGATGATGGCCGCCGATCACCACCGCCAGCTCAAGGCGGAGATAGCCACTCATCCGCTCTACGACCAGCTTCTGGCCGCACACGTCGCCTGTCTCCGAGTGGCCACTCCCATCGACCAGCTTCCACTCATCGACGCTCAGTTATCTCACTCTCACCATCTTCTCCGCTCTTATGTCTCTCAACACACCCACGCTCTCTCCCCCAACCATCGCCAAGAACTCGACAACTTCCTCGCACAGTATTTGATTGTTTTGTGTACTTTCAAAGAACAGCTTCAGCAACACGTCAGAGTCCACGCCGTCGAGGCTGTCATGGCCTGCCGTGACATCGAAAACACCTTACAAGCTCTCACAGGAGTGAGTTTGGGAGAAGGAACTGGTGCAACAATGTCAGATGATGAAGATGATTTGCAGATGGATTTTTCTTTAGATCAATCTAGCGCTGAAGGGCATGACATGATGGGATTTGGTCCGTTACTTCCAACAGAATCTGAAAGGTCACTGATGGAAAGAGTTCGTCAGGAACTAAAGATTGAGCTGAAACAGGGTTTCAAGTCAAGAATTGAAGATGTCAGGGAAGAAATATTGAGAAAACGTAGAGCTGGGAAATTACCAGGTGACACAACTTCGGTGTTAAAGAACTGGTGGCAACAACATGCAAAGTGGCCTTACCCAACTGAAGATGACAAGGCAAAACTTGTGGAGGAGACAGGGTTGCAGCTGAAACAAATCAATAATTGGTTCATCAACCAAAGGAAACGCAACTGGCACAGTAACTCTCAATCGGTTACCTCTTTGAAGTCGAAGCGCAAGAGAGTGTAG 840 0.4857 MQEPTLRMMAADHHRQLKAEIATHPLYDQLLAAHVACLRVATPIDQLPLIDAQLSHSHHLLRSYVSQHTHALSPNHRQELDNFLAQYLIVLCTFKEQLQQHVRVHAVEAVMACRDIENTLQALTGVSLGEGTGATMSDDEDDLQMDFSLDQSSAEGHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHAKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKRV 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01756 279 ProSiteProfiles 'Homeobox' domain profile. 201 264 IPR001356 GO:0003677
Cca06g01756 279 SMART HOX_1 203 268 IPR001356 GO:0003677
Cca06g01756 279 SMART KNOX1_2 15 59 IPR005540 GO:0003677|GO:0005634
Cca06g01756 279 CDD homeodomain 204 265 IPR001356 GO:0003677
Cca06g01756 279 Pfam KNOX1 domain 17 58 IPR005540 GO:0003677|GO:0005634
Cca06g01756 279 Gene3D - 200 274 - -
Cca06g01756 279 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 7 10 278 - -
Cca06g01756 279 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 10 278 - -
Cca06g01756 279 Pfam Homeobox KN domain 221 260 IPR008422 GO:0003677|GO:0006355
Cca06g01756 279 SUPERFAMILY Homeodomain-like 203 268 IPR009057 -
Cca06g01756 279 Pfam KNOX2 domain 74 124 IPR005541 GO:0003677|GO:0005634
Cca06g01756 279 ProSiteProfiles ELK domain profile. 181 201 IPR005539 GO:0003677
Cca06g01756 279 SMART KNOX2_2 70 125 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01756 Cca-Chr6 32844201 32850187 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01756 1 277 Homeobox Transcription Factor Family AT1G62990 78.157 2.85e-168 466
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Cca06g01756 KNOX2 1.1e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01756 - - gmx:100808872 531.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01756 06 32844201 32850187 Cca06g01756 06 32844201 32850187 ECH
Cca11g01690 11 41203835 41209855 Cca06g01756 06 32844201 32850187 PCT