Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01747 ATGACCATAACCAACCAAGTATTACTTGCATTGCCTCTTGCTCTTGCTCTTGTTTTCGTCTCAATTAGTGTATGTCCAACTTCAGCACACCAAAATCCAGAATTTGTGAAAGCAAATGATGAACATTATTTGCCAACAGAGAAACTCGATGCTGAAAGCAACTTATTGacttatattgttcgtgttaaaaagcctcaggatgatgatgctcttcagtccaaggacctgcaaagttggtaccgttcccttctgccagctagtgcaaaaactgagaaccagcaacgcatcactttctcataccgcaacgtggtggatggatttgccgtgaaattgaccccagaagaagccaaagctcttcaagagaaagaggaggttgtgtcagcccgtcctgaaaggaccttttccttgcacattactcacactccaagcttcttggggttgcaacagggactaggattatggtccaactccaattttggcaaaggcatcataattggaattcttgatacaggaataacgcctgaccacccttctttttctgatgaaggaatgccatttccaccagcaaagtggaatggccactgtgaattctcaggccggaagatttgcaacaacaagctcattggtgcaagaaactttgtcaaaaaccctaatttaacccttccactggatgatgttggtcatgggacccacacagcaagcacagcagctggaagatctgtccaaggtgccaatgtctatggcaatgctaagggtacagcagttggcatggcaccggatgcacacttggcAATTTACAAGGTCTGTAACCTCTTTGGTTGTTCTGAAGGTGCAATACTAGCTGCAATGGACACTGCCATTGATGATGGCGTGGATGTACTTTCTCTCTCCCTTGGGGGACCCTCTGCTCCTTTCTTTGACGACCCTATTGCACTTGGTGCATTCAGTGCAATTCAGAAGGGAATCTTCGTTAGTTGTTCAGCTGCTAACGGCGGTCCAGGTTATTATACTTTGTCTAACGAGGCTCCATGGATTCTCACCGTTGGTGCCAGCACCATTGACAGAAGAATTGTAGCAACGGCAAAACTTGGCAACGGGGAAGTGTTTAACGGGGAATCAGTGTATCAACCCAACAACTTCACGTCCACCTTACTCCCTCTTGTGTATGCAGGTGCAAATGGAAACGAGTCATCTAAATTTTGTGCCCTAGGATCCTTAGAGAACGTGGATGTGAAGGGAAAGGTAGTGTTGTGTGAGGTAGGTGGATTTGTTAGAAGAATAGACAAAGGACAAGAAGTTAAGAACGCTGGTGGTGCAGCCATGATCCTTATGAACTCACAAATTGAAGAGTTCAATCCCACTGCTGATGTTCACGTTCTCCCTGCTACACACGTGAGCTACGTTGCTGGGTTAGGCATAAAATATTacataaactcaacatcaacaccaacagcaacaATTTTGTTCCGTGGAACAGTTATTGGGAATCCTCTTGCACCCGCAGTTACTTCCTTTTCCTCAAGAGGTCCAAGTTTTGCAAGCCCGGGAATTCTGAAGCCAGACATCATAGGACCAGGACAGAACATTCTAGCTGCATGGCCTGTGTCTTTGGACAACAATGTTCCTCCATTCAACCTAATCTCAGGCACCTCAATGTCATGCCCTCATCTAAGTGGCATTGCAGCTTTGCTTAAAAACTCTCATCCAGATTGGTCTCCTGCTGCAATAAAATCAGCAATCATGACCACTGCTAACACAGTGAATCTTGGAGGCAAACCCATATTGGACCAAAGGCTTCTAACTGCTGACATATTTGCCACAGGTGCTGGACATGTTAACCCTTTGAAGGCCAATGATCCAGGGCTTGTTTATGATATTCAACCAAATGATTACATTCCCTATTTGTGTGGTTTGAACTACACTGACAAAGAAGTTGGACTGATTTTGAACCAGAAGGTGAAATGCTCGGAGGTAAAAAGCATAAAGCAAGCGCAACTCAACTATCCCTCGTTTTCTATTCTGTTGGGATCAACTTCACTGTTCTACACGAGAACGCTCACAAATGTTGGACCTGCCAACATAACCTACTCTGTGGAAGTTAATGCTCCTTTGGCAGTGGGAATGAGCATAAGCCCTAGTCACATAACATTCACGGAGGTGAAGCAGAAGGTTACATACGCGGTTGGATTTTACCCTGAAGACAAAAAGAATAGAGGGAATAACTCGTTTGCTCAGGGGTCTATCAGGTGGGTATCTAGCAATTACTCTGTTAGCATCCCTATAGCTGTCATCTTCAAGTGA 2301 0.3155 MTITNQVLLALPLALALVFVSISVCPTSAHQNPEFVKANDEHYLPTEKLDAESNLLTYIVRVKKPQDDDALQSKDLQSWYRSLLPASAKTENQQRITFSYRNVVDGFAVKLTPEEAKALQEKEEVVSARPERTFSLHITHTPSFLGLQQGLGLWSNSNFGKGIIIGILDTGITPDHPSFSDEGMPFPPAKWNGHCEFSGRKICNNKLIGARNFVKNPNLTLPLDDVGHGTHTASTAAGRSVQGANVYGNAKGTAVGMAPDAHLAIYKVCNLFGCSEGAILAAMDTAIDDGVDVLSLSLGGPSAPFFDDPIALGAFSAIQKGIFVSCSAANGGPGYYTLSNEAPWILTVGASTIDRRIVATAKLGNGEVFNGESVYQPNNFTSTLLPLVYAGANGNESSKFCALGSLENVDVKGKVVLCEVGGFVRRIDKGQEVKNAGGAAMILMNSQIEEFNPTADVHVLPATHVSYVAGLGIKYYINSTSTPTATILFRGTVIGNPLAPAVTSFSSRGPSFASPGILKPDIIGPGQNILAAWPVSLDNNVPPFNLISGTSMSCPHLSGIAALLKNSHPDWSPAAIKSAIMTTANTVNLGGKPILDQRLLTADIFATGAGHVNPLKANDPGLVYDIQPNDYIPYLCGLNYTDKEVGLILNQKVKCSEVKSIKQAQLNYPSFSILLGSTSLFYTRTLTNVGPANITYSVEVNAPLAVGMSISPSHITFTEVKQKVTYAVGFYPEDKKNRGNNSFAQGSIRWVSSNYSVSIPIAVIFK 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01747 766 CDD Peptidases_S8_3 136 585 IPR034197 -
Cca06g01747 766 Pfam Peptidase inhibitor I9 57 137 IPR010259 -
Cca06g01747 766 SUPERFAMILY Subtilisin-like 136 622 IPR036852 GO:0004252|GO:0006508
Cca06g01747 766 Gene3D - 354 495 - -
Cca06g01747 766 ProSitePatterns Serine proteases, subtilase family, aspartic acid active site. 165 176 IPR023827 -
Cca06g01747 766 Pfam Fibronectin type-III domain 665 763 IPR041469 -
Cca06g01747 766 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 45 137 IPR037045 -
Cca06g01747 766 PANTHER SUBTILISIN-LIKE SERINE PROTEASE 39 765 - -
Cca06g01747 766 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 39 765 IPR045051 -
Cca06g01747 766 Pfam Subtilase family 160 591 IPR000209 GO:0006508|GO:0008236
Cca06g01747 766 Pfam PA domain 386 471 IPR003137 -
Cca06g01747 766 ProSiteProfiles Serine proteases, subtilase domain profile. 133 618 - -
Cca06g01747 766 Gene3D Peptidase S8/S53 domain 162 631 IPR036852 GO:0004252|GO:0006508
Cca06g01747 766 SUPERFAMILY PA domain 384 506 IPR046450 -
Cca06g01747 766 Gene3D - 635 765 - -
Cca06g01747 766 PRINTS Subtilisin serine protease family (S8) signature 160 179 IPR015500 -
Cca06g01747 766 PRINTS Subtilisin serine protease family (S8) signature 224 237 IPR015500 -
Cca06g01747 766 PRINTS Subtilisin serine protease family (S8) signature 548 564 IPR015500 -
Cca06g01747 766 CDD PA_subtilisin_like 360 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01747 Cca-Chr6 32761029 32763967 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01747 57 766 Subtilisin-like Serine Gene Family AT1G04110 45.286 0.0 603
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01747 - - gmx:100799902 1287.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01747 06 32761029 32763967 Cca06g01747 06 32761029 32763967 ECH
Cca11g01684 11 41131818 41134133 Cca06g01747 06 32761029 32763967 PCT