Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01744 ATGAGAAGACACCGTGGAATTCATCTCTCTCATGCTCTATTGTGCGCCGTTTTCTGTTTTTTTGTGACAGCCTCAGCGGCAACTGAGAGGGAAATTTTGCTTGAATTCAAGGGAAACGTCACGGATGATCCACGCGCCAGCTTGAGTTCGTGGGTTTCAAGTGGAAACCCGTGCCATGATTACAATGGTGTTTATTGCAACTCTGAAGGGTTTGTGGAAAGAATAGTGCTTTGGAACACTAGCTTGGGTGGGGTGTTGTCCTCGTCGCTTTCGGGCTTGAAGAGGTTGAGGATATTGACGCTGTTTGGGAACCGTTTCTCGGGTGGTATTCCAGAAGAGTATGGTGATCTTCACTCGTTGTGGAAGATCAATTTGAGTTCCAATGCTTTATCTGGTTCGATCCCTGAGTTCATTGGTGATTTGCCAAGCATTCGGTTTTTGGATTTATCGAAGAATGGCTTCACTGGGGAGATACCTTCGGCTTTGTTTAGGTACTGCTACAAAATCAAGTTTGTTTCTCTTTCTCATAATAAACTTGCTGGTTCAATTCCTGCCTCCTTGGTGAATTGCTCCAACCTTGAAGGGTTTGACTTTTCCTTCAACAACCTTAGTGGGGTTGTCCCTTCGCGGCTTTGTGACATTTCCGGGTTGTCATATGTGTCGCTGAGAAGCAATGCCTTTTCAGGGAGCGTGCAGGATCTCGTTTCCTCATGCCAAAGTTTGGAACATTTGGATTTTGGTAGTAATAGGTTCACTGATTTGGCTCCTTTCAGTGTCCTTGGAATGCAAAATCTTACCTATCTCAACTTATCGTATAATGGATTTGGAGGACATATTCCTGAGATCAGTTCTTGTAGTGGGAGGTTGGAAATCTTTGATGCTTCAGGGAATTCTTTGGATGGGGAGATTCCTTCCAGCATAACTAAATGCAAGAATCTAAAGCTCTTGGCGTTGGAGTTGAATAGGCTTGAGGGGAATATCCCAGTGGATATTCAGGAATTGCGGGGACTAATAGTTATCAAATTGGGTAATAATTCCATTGGTGGAGAGATTCCTAAGGGCTTTGGCAATGTTGAGCTGCTTGAATTGTTGGATTTGCACAATCTAAACCTCACTGGCGAAATTCCAGATGATATAAGCAATTGCCAGTTTCTTCTGGGGCTGGATGTTTCTGGTAATAACTTAGAAGGCGAGATTCCTCAGACCCTTTACAACTTGAGAAACCTGGAATCCCTTAACCTACACCATAACCAGCTTAATGGAAGCATTCCCCCAAGCCTAGGAAACCTATCAAAGATCCAGTTCCTAGACCTGTCACATAATTCACTTTCTGGCTCAATCCCTCCTTCCCTCGGAAATTTAAATAACTTGACACATTTTGATCTCTCGTTCAATAATCTCTCTGGTGTCATTCCTGATGCAATACGCCGTTTTGGTGCATCTGCATTTTCCAATAATCCTTTTCTCTGTGGTGCTCCTTTAGACACCCCTTGCTTGGTAAATGGAACTATATCACCTTCATCTCCCGGGAAGCCTAAAGTTCTAAGTACCTCAGCAATTATTGCAATTGTTGCTGCAGCTGTAATTCTCACCGGGGTTTGTTTGGTGACCATCATGAATATGAGGGCGCGTGGTAGAAAAAAAGATGATGATCAGATTATGATTGTTGAGAGCACACCTCTTGGATCATCAGAATCAAATGTTATAATTGGAAAGCTGGTCCTCTTCAGCAAAAGTTTACCATCAAAATATGAAGATTGGGAGGCAGGTACCAAAGCATTGCTTGACAAAGAGTCTTTGATAGGTGGTGGATCAATCGGTACAGTCTACCGAACTGATTTTGAAGGCGGCATCTCAATTGCAGTGAAGAAGCTCGAGACTCTGGGAAGGATCAGAAACCAGGAGGAATTTGAGCTCGAAATTGGACGACTAGGCAACCTTCAACACCCTAATCTAGTTGCTTTTCAAGGCTACTATTGGTCATCTTCAATGCAGTTGATCCTATCAGAGTTTGTCCCAAATGGAAATCTCTACGATAATCTACATGGGTTTGGCTATCCCGGAACCAGCACTAGTAGAGGCAATAGGGAATTATATTGGTCTAGAAGGTTCCAGGTAGCACTGGGAACTGCAAGAGCCCTTTCATATCTCCACCACGATTGTAGACCTCCAATCCTTCATCTCAACATGAAATCCTCTAACATACTCCTAGATGACAAGTATGAAGCTAAGTTGTCTGACTATGGATTAGGAAAGTTGCTTCCCATTTTGGATAACTATGGTCTGACCAAATTCCACAATGCTGTGGGATATGTTGCACCAGAGTTGGCTCAAGGGCTTAGGCAGAGTGAGAAGTGTGATGTTTACAGTTTTGGAGTCATTCTTTTGGAACTGGTTACTGGGAGGAAGCCTGTGGAAAGTCCAACCACAAATGAGGTGGTGGTTTTGTGTGAATATGTAAGAGGCTTGTTGGAGACTGGCTCAGCTTCAAATTGCTTTGACAGAAATTTACTTGGCTTTGCTGAGAATGAATTGATTCAGGTTATGAGATTGGGGCTAATTTGTACTTCGGAGGATCCTTTAAGGAGACCAAGCATGGCTGAGGTTGTTCAGGTCCTTGAGTCCATTAGAAATGGAGTGGAATCCCATTAA 2652 0.4336 MRRHRGIHLSHALLCAVFCFFVTASAATEREILLEFKGNVTDDPRASLSSWVSSGNPCHDYNGVYCNSEGFVERIVLWNTSLGGVLSSSLSGLKRLRILTLFGNRFSGGIPEEYGDLHSLWKINLSSNALSGSIPEFIGDLPSIRFLDLSKNGFTGEIPSALFRYCYKIKFVSLSHNKLAGSIPASLVNCSNLEGFDFSFNNLSGVVPSRLCDISGLSYVSLRSNAFSGSVQDLVSSCQSLEHLDFGSNRFTDLAPFSVLGMQNLTYLNLSYNGFGGHIPEISSCSGRLEIFDASGNSLDGEIPSSITKCKNLKLLALELNRLEGNIPVDIQELRGLIVIKLGNNSIGGEIPKGFGNVELLELLDLHNLNLTGEIPDDISNCQFLLGLDVSGNNLEGEIPQTLYNLRNLESLNLHHNQLNGSIPPSLGNLSKIQFLDLSHNSLSGSIPPSLGNLNNLTHFDLSFNNLSGVIPDAIRRFGASAFSNNPFLCGAPLDTPCLVNGTISPSSPGKPKVLSTSAIIAIVAAAVILTGVCLVTIMNMRARGRKKDDDQIMIVESTPLGSSESNVIIGKLVLFSKSLPSKYEDWEAGTKALLDKESLIGGGSIGTVYRTDFEGGISIAVKKLETLGRIRNQEEFELEIGRLGNLQHPNLVAFQGYYWSSSMQLILSEFVPNGNLYDNLHGFGYPGTSTSRGNRELYWSRRFQVALGTARALSYLHHDCRPPILHLNMKSSNILLDDKYEAKLSDYGLGKLLPILDNYGLTKFHNAVGYVAPELAQGLRQSEKCDVYSFGVILLELVTGRKPVESPTTNEVVVLCEYVRGLLETGSASNCFDRNLLGFAENELIQVMRLGLICTSEDPLRRPSMAEVVQVLESIRNGVESH 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01744 883 ProSiteProfiles Leucine-rich repeat profile. 240 261 IPR001611 GO:0005515
Cca06g01744 883 SUPERFAMILY RNI-like 183 485 - -
Cca06g01744 883 SMART LRR_typ_2 406 430 IPR003591 -
Cca06g01744 883 SMART LRR_typ_2 334 357 IPR003591 -
Cca06g01744 883 SMART LRR_typ_2 262 285 IPR003591 -
Cca06g01744 883 SMART LRR_typ_2 454 477 IPR003591 -
Cca06g01744 883 SMART LRR_typ_2 238 261 IPR003591 -
Cca06g01744 883 SMART LRR_typ_2 141 165 IPR003591 -
Cca06g01744 883 Pfam Protein kinase domain 597 871 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g01744 883 Pfam Leucine rich repeat 216 274 IPR001611 GO:0005515
Cca06g01744 883 Pfam Leucine rich repeat 388 443 IPR001611 GO:0005515
Cca06g01744 883 Gene3D Ribonuclease Inhibitor 28 141 IPR032675 -
Cca06g01744 883 ProSiteProfiles Leucine-rich repeat profile. 408 431 IPR001611 GO:0005515
Cca06g01744 883 ProSiteProfiles Protein kinase domain profile. 595 883 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g01744 883 SUPERFAMILY L domain-like 60 229 - -
Cca06g01744 883 Gene3D Phosphorylase Kinase; domain 1 565 671 - -
Cca06g01744 883 PANTHER - 23 882 - -
Cca06g01744 883 Pfam Leucine Rich Repeat 456 476 IPR001611 GO:0005515
Cca06g01744 883 SUPERFAMILY Protein kinase-like (PK-like) 596 874 IPR011009 -
Cca06g01744 883 Pfam Leucine rich repeat N-terminal domain 27 67 IPR013210 -
Cca06g01744 883 Gene3D Ribonuclease Inhibitor 161 503 IPR032675 -
Cca06g01744 883 PANTHER UNNAMED PRODUCT 23 882 - -
Cca06g01744 883 Gene3D Transferase(Phosphotransferase) domain 1 672 882 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01744 Cca-Chr6 32718416 32722090 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01744 25 882 Receptor kinase-like Gene Family AT1G62950 65.398 0.0 1102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Cca06g01744 Pkinase 2.7e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01744 - - gmx:100805681 1565.44