Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01736 ATGGATCCTATCGCAGCACACGGCCATTCTCTCCCCCCTCCTTTCCACCTACACCAACACCAACACCAATTCCACGCGTTGCAACAACAAAACACAGAAGACGAACAAAGCGGAAGCAGTGGAGGCCTAAACCTCGCTCACAAAGAAAACAACGCCGAAGATAACAACAAAGAAGGACCTGCCACTGCTTCAGCTTCAGCCGAAACCGAAATCACAAGAAGACCTCGCGGAAGACCCACCGGATCCAAGAACAAGCCCAAACCCCCCATCATCATCACTCGCGACAGCGCCAACGCCCTCAAAACGCACGTCATGGAGGTCGCCGACGGCTGCGACGTCGTCGACAGCGTCTCCACCTTCGCCCGCCGCCGCCAGCGAGGCGTCTGTATCATGAGCGGCACCGGAACCGTCACCAACGTCACGCTCCGCCAACCGGCTTCTTCCGGCGCCGTCGTCACTCTCCACGGAAGGTTCGAGATCCTGTCCCTCGCCGGCTCCTTCCTGCCGCCTCCGGCGCCTCCGGCAGCCTCCGGTTTGACAATATACCTGGCCGGAGGACAGGGCCAGGTGGTCGGAGGAAGCGTGGTGGGAGCGCTGATTGCTTCGGGGCCAGTGGTTATCATGTCAGCTTCGTTCAGCAACGCTGCGTATGAGAGGCTTCCTTTGGAAGATGAGGATCCTTCGGTGGCGGTTCAGGGGGGTTCGATTGGGTCACCCggcggtggcggtggcgttggcgttggcgttggcgttggTCAACCACAGCAGCTTATGGGGGATTCAAGCACTGCGCCTCTTTTTCATGGGTTGAATCCTAATCTTCTGAATTCCGTTCAGATGCCGAACGAGACTTTCTGGGCAACGGGTCGCTCTCCTTACTGA 882 0.5567 MDPIAAHGHSLPPPFHLHQHQHQFHALQQQNTEDEQSGSSGGLNLAHKENNAEDNNKEGPATASASAETEITRRPRGRPTGSKNKPKPPIIITRDSANALKTHVMEVADGCDVVDSVSTFARRRQRGVCIMSGTGTVTNVTLRQPASSGAVVTLHGRFEILSLAGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGALIASGPVVIMSASFSNAAYERLPLEDEDPSVAVQGGSIGSPGGGGGVGVGVGVGQPQQLMGDSSTAPLFHGLNPNLLNSVQMPNETFWATGRSPY 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01736 293 Gene3D - 100 228 - -
Cca06g01736 293 CDD DUF296 101 168 IPR005175 -
Cca06g01736 293 SUPERFAMILY AF0104/ALDC/Ptd012-like 97 227 - -
Cca06g01736 293 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 7 293 IPR014476 GO:0003680
Cca06g01736 293 Pfam Plants and Prokaryotes Conserved (PCC) domain 101 214 IPR005175 -
Cca06g01736 293 MobiDBLite consensus disorder prediction 1 91 - -
Cca06g01736 293 MobiDBLite consensus disorder prediction 22 46 - -
Cca06g01736 293 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 24-RELATED 7 293 - -
Cca06g01736 293 ProSiteProfiles PPC domain profile profile. 97 237 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01736 Cca-Chr6 32670967 32672382 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01736 68 293 AT-hook Motif Nuclear Localized (AHL) Family AT2G45430 66.525 5.72e-81 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01736 - - gmx:100781436 407.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01736 06 32670967 32672382 Cca06g01736 06 32670967 32672382 ECH