Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01726 ATGGAAGTTCTCTATCTGTTTCCACTGGTTGCATTTCTCATTCCTCAAATGGTTATTGGGAATGCGGAGCTTAGAGCTCTGATGGGGTTGAAGTCCTCTCTGGACCCGGAGGGCAAGATCCTTAGCTCGTGGATCAGTGATGGTGATCCATGCAGTGGTTTGTTCGAAGGGGTTGCGTGCAACCAGCATCGAAAAGTAGTCAACATCTCCTTGCAGGGAAAGGGTCTTTCAGGATGGCTCTCTCCAGCACTTGCTGAACTCAAATGCTTGTCAGGGTTATACTTGCATTACAACAACCTTTCTGGTGAGATACCACCACACTTTTCAAATCTTACTGATCTCCTTGAGCTCTATCTCAACGTCAACAGTTTATCTGGAACTATTCCTCCTGATCTCGGCAACATGGTTAGTCTCCAAGTGCTGCAGTTGGGAGATAACCAGTTGGTGGGAAATATACCTACACAGATAGGTTCTTTGAAGCAGCTTAGTACTCTTGCTTTGCAATATAACAAGTTTACTGGTCAAGTTCCTCTTAGCTTGGGGAACTTGGAGAAGCTAAGCAGGCTAAATTTGAGCTTCAACAATTTTAGTGGTACAATTCCGGCAACACTAGCACATATTCAACATTTGGAAGTTCTAGACATTCAGAACAATTCTTTATCAGGGATTGTTCCTTCGGCATTGAAGAGACTTGGGGAAGGATTCCAAGGTGCAAACAACCCGGGTTTATGTGGTGTTGGATTTTCTACTCTGAGAGCTTGCAACAAAGATCAAAATTTAAACGTTAACCATATTGATACATCAGATGGAGACCAACCCAAAAGTAGTAATTCTTCAAAGGCTCTCCCAGAGCCAGCAAATGTTCAGTTGCATTGTGATCAGACCCATTGTTCAAAATCAAAGAGGTTTCCTCAAACTGTCATCACAGCAGGGGCTATAATCATTACTCTCACATTCATATGTGCTGGTTTTTTGACATTCTTCAGATACCGCCGTCAAAAGCAGAGGATTGGTAATACCTCAAGTTCTTCTTGTGAAGGGAAACTTAGTTCTGATCAGCCTAAAGAGTTCTACACAAAAAGTCCATCTGCACTCGTTAATATCGAGTATTATAGTGGATGGGATCCATTGTCTAATGGTCAAAATGCTGATGCTGGTCGGTTATCCAATGAGTATCTAAATCAATTTAGGTTTAATGTGGATGAGGTTGAATCTGCAACACAGTACCTCTCGGAAGCCAATTTACTTGGTAAGAGCAAATTCTCAGCAGTTTATAAAGGAGTTCTCAGAGATGGTTCTCTTGTGGCTATTAGAAGCATCAGTGTGACATGCTGCAAAACCGAGGAAGCTGAATTTGTAAAGGGGTTGAACTTATTAACCTCTCTGAGACATGAAAATCTTGTTAGACTGAGAGGTTTTTGTTGCTCGAGGAGTAGAGGTGAATGTTTCCTTGTCTATGACTTTGCCACCATGGGTAACCTGTCTAAATATATTGACATAGAAGATGGAAGTGACCATGTACTTGAGTGGTCCAAGAGAGTTTCTATCATCAAGGGTATTGCAAAGGGTATTGGATATCTGCATAGCAATGAAGCAAGCAAACCTACAATAGTTCACCAGAATATTTCAGTAGAAAATGTTCTCCTTGACCACCAGTTCAACCCATTGATCATGGATGCAGGATTACCTAAGATTCTTGCAGATGATGTTGTTTTCTCAGCTCTAAAAGTAAGTGCTGCAATGGGATACTTAGCTCCCGAATATATTACTACTGGACGGTTCACTGAGAAGAGTGACATATACGCATTTGGAGTTATTATTCTTCAAGTTCTATCTGGCAAGACGACAATTGGTAGTTCAATACGGATGGCAATTGAGTCTCTAAGATTTGATGATTGTGTTGACACAAACCTTAAGGGAAGATATTCTAAATTTGAAGCAGCAACGCTTTCAAAGCTTGCAATGCAGTGTACGCATGAGCTTCCTGACCAAAGACCAACCATGGTGAATGTGATTCAGGAGCTTAACGTGTTTTCTGTTCATTTATAA 2049 0.4129 MEVLYLFPLVAFLIPQMVIGNAELRALMGLKSSLDPEGKILSSWISDGDPCSGLFEGVACNQHRKVVNISLQGKGLSGWLSPALAELKCLSGLYLHYNNLSGEIPPHFSNLTDLLELYLNVNSLSGTIPPDLGNMVSLQVLQLGDNQLVGNIPTQIGSLKQLSTLALQYNKFTGQVPLSLGNLEKLSRLNLSFNNFSGTIPATLAHIQHLEVLDIQNNSLSGIVPSALKRLGEGFQGANNPGLCGVGFSTLRACNKDQNLNVNHIDTSDGDQPKSSNSSKALPEPANVQLHCDQTHCSKSKRFPQTVITAGAIIITLTFICAGFLTFFRYRRQKQRIGNTSSSSCEGKLSSDQPKEFYTKSPSALVNIEYYSGWDPLSNGQNADAGRLSNEYLNQFRFNVDEVESATQYLSEANLLGKSKFSAVYKGVLRDGSLVAIRSISVTCCKTEEAEFVKGLNLLTSLRHENLVRLRGFCCSRSRGECFLVYDFATMGNLSKYIDIEDGSDHVLEWSKRVSIIKGIAKGIGYLHSNEASKPTIVHQNISVENVLLDHQFNPLIMDAGLPKILADDVVFSALKVSAAMGYLAPEYITTGRFTEKSDIYAFGVIILQVLSGKTTIGSSIRMAIESLRFDDCVDTNLKGRYSKFEAATLSKLAMQCTHELPDQRPTMVNVIQELNVFSVHL 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01726 682 SUPERFAMILY Protein kinase-like (PK-like) 389 678 IPR011009 -
Cca06g01726 682 Pfam Leucine rich repeat 185 231 IPR001611 GO:0005515
Cca06g01726 682 Gene3D Transferase(Phosphotransferase) domain 1 490 679 - -
Cca06g01726 682 Pfam Leucine rich repeat N-terminal domain 21 61 IPR013210 -
Cca06g01726 682 MobiDBLite consensus disorder prediction 263 284 - -
Cca06g01726 682 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 9 679 - -
Cca06g01726 682 PANTHER PROTEIN NSP-INTERACTING KINASE 2-LIKE 9 679 - -
Cca06g01726 682 Gene3D Ribonuclease Inhibitor 176 240 IPR032675 -
Cca06g01726 682 Gene3D Ribonuclease Inhibitor 20 175 IPR032675 -
Cca06g01726 682 Gene3D Phosphorylase Kinase; domain 1 378 488 - -
Cca06g01726 682 Pfam Protein tyrosine and serine/threonine kinase 414 675 IPR001245 GO:0004672|GO:0006468
Cca06g01726 682 ProSiteProfiles Protein kinase domain profile. 410 682 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g01726 682 SUPERFAMILY L domain-like 24 230 - -
Cca06g01726 682 SMART LRR_typ_2 183 206 IPR003591 -
Cca06g01726 682 SMART LRR_typ_2 207 230 IPR003591 -
Cca06g01726 682 SMART LRR_typ_2 135 159 IPR003591 -
Cca06g01726 682 SMART LRR_typ_2 87 110 IPR003591 -
Cca06g01726 682 SMART LRR_typ_2 111 134 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01726 Cca-Chr6 32565520 32569521 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01726 15 523 Miscellaneous Gene Families AT4G22730 57.670 0.0 582
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Cca06g01726 PK_Tyr_Ser-Thr 5.7e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01726 - - gmx:100797612 1213.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01726 06 32565520 32569521 Cca06g01726 06 32565520 32569521 ECH