Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01721 ATGGGGAGGCAACCTTGCTGTGACAAACTTGGTGTGAAGAAGGGTCCATGGACTGCTGAGGAAGACAAAAAACTCATCAACTTCATTCTCACCAATGGCCAGTGTTGTTGGCGTGCTGTTCCAAAGCTTGCTGGTCTTAGAAGATGTGGCAAGAGTTGTCGTCTTCGTTGGACCAATTATCTAAGACCTGACTTGAAGAGAGGGCTCCTCACACAGGCAGAAGAACAGCTAGTTATCGATCTCCATGCTCGTCTTGGCAACAGGTGGTCCAAGATTGCTGCGAGGTTACCAGGAAGGACAGACAACGAGATTAAAAATCACTGGAACACCCACATAAAGAAAAAGCTCCTTAAGATGGGTATTGATCCTGTTACTCATGAACCTCTTAACAAACAAGTCACATCATCTCAGGATAGTTCCTCCCCTGCACAACATTTGCCACAAGCTGATAGCACCCTTCAAGTTGAACAAAAAGTAGGGGCTCTCAATTCGGAAGAGAATTCCACCTCATCACCAAATGAAAATTCTTCTTCCCTTTTGGTGGAAAGCATTTGCAAGAATAATGAGTCTCTCATGAACAGCATTTGGCTGGATGAATCTCCTCTTATGGACACATTATGGGACATTACACCTAAAGTAGAGAATGAAAACAATGACATGGGCTTGCCAATATGGGAGGATAATTGTTCTTGGTTGTTGGACTTCCAGGACTTTGGTGTTCATGATTTTGGTTTTAATTGTTTCAGCGAGATTGAGTCAAATGCACTGCAAACTATAGGCATGGACAGAAAAGGGCTTTAG 801 0.4357 MGRQPCCDKLGVKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLTQAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKLLKMGIDPVTHEPLNKQVTSSQDSSSPAQHLPQADSTLQVEQKVGALNSEENSTSSPNENSSSLLVESICKNNESLMNSIWLDESPLMDTLWDITPKVENENNDMGLPIWEDNCSWLLDFQDFGVHDFGFNCFSEIESNALQTIGMDRKGL 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01721 266 Gene3D - 12 67 - -
Cca06g01721 266 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Cca06g01721 266 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Cca06g01721 266 CDD SANT 16 61 IPR001005 -
Cca06g01721 266 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 251 - -
Cca06g01721 266 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Cca06g01721 266 SMART sant 13 63 IPR001005 -
Cca06g01721 266 SMART sant 66 114 IPR001005 -
Cca06g01721 266 MobiDBLite consensus disorder prediction 131 150 - -
Cca06g01721 266 CDD SANT 71 112 IPR001005 -
Cca06g01721 266 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Cca06g01721 266 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Cca06g01721 266 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Cca06g01721 266 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Cca06g01721 266 Gene3D - 70 146 - -
Cca06g01721 266 PANTHER PROTEIN ODORANT1-LIKE 2 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01721 Cca-Chr6 32532553 32534233 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01721 1 258 MYB Transcription Factor Family AT4G12350 56.383 2.51e-97 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca06g01721 Myb_DNA-binding 2.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01721 K09422 - gmx:100800360 456.447
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01721 06 32532553 32534233 Cca06g01721 06 32532553 32534233 ECH