Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01718 ATGTGCATCCTTATGAGAAACATGGCAACCACTGCACTCAACCTTGCTTTCCTGCTTCTCATCATCTGCACCGCACAATCTTCCACTGCCGAACCAAACCCCCAAGAGTTCGTCAAGACCTCATGCAGGGCCACTCGCTACCCTCTTTTATGCGTCCACTCTCTGTTGGCCTACGCAACCGTCATCCGCCGAAGTGACCGGCAACTGGCCATGGCCGCTTTGTCGGTGACCATATCCCGCACCCGATCCTCCGCGTCCTTCGTCAAGAACATGTCGAAAGCGAGAGGCGTGAGGAAGGGTAGGGAGTGGAGGGCGGTGCAAGACTGCGTGGAGAACATGGGCGACAGCGTGGAGCGTCTGAGGCAATCGGTTAGGGAGTTGGGCCGCAGCGGTGGGCCCGCCGGAGAGGACTTCGTGTGGCACATGAGCAACGTTCAGACTTGGGTGAGCGCCGCCCTCACCGATGACAACACGTGTCTGGATGGCTTCGGCGCTTCTGCCAGCGTCAAGGGTGGCATCAAGGATAGGGTTCTCCGTGTTGCTCAACTCACCAGCAACGCTCTCGCTTTCGTTAATCGCTTCGCCTCAACCCACCCTACTCCTCAAACTCCTTAA 615 0.5789 MCILMRNMATTALNLAFLLLIICTAQSSTAEPNPQEFVKTSCRATRYPLLCVHSLLAYATVIRRSDRQLAMAALSVTISRTRSSASFVKNMSKARGVRKGREWRAVQDCVENMGDSVERLRQSVRELGRSGGPAGEDFVWHMSNVQTWVSAALTDDNTCLDGFGASASVKGGIKDRVLRVAQLTSNALAFVNRFASTHPTPQTP 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01718 204 SMART PMEI_2 33 190 IPR006501 GO:0004857
Cca06g01718 204 TIGRFAM PME_inhib: pectinesterase inhibitor domain 13 192 IPR006501 GO:0004857
Cca06g01718 204 PANTHER PECTINESTERASE INHIBITOR-LIKE 19 198 - -
Cca06g01718 204 PANTHER PECTINESTERASE INHIBITOR 9 19 198 - -
Cca06g01718 204 Pfam Plant invertase/pectin methylesterase inhibitor 37 189 IPR006501 GO:0004857
Cca06g01718 204 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 35 194 IPR035513 -
Cca06g01718 204 CDD PMEI-like_3 40 196 - -
Cca06g01718 204 Gene3D Invertase/pectin methylesterase inhibitor family protein 34 194 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01718 Cca-Chr6 32509294 32510193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01718 26 197 Carbohydrate Esterase AT3G14310 28.000 1.04e-19 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01718 - - gmx:100776636 260.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01718 06 32509294 32510193 Cca06g01718 06 32509294 32510193 ECH