Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01717 ATGGCCGACGAAGCCAAAGCCAAGGGCAACGCAGCCTTCTCCTCCGGCGACTACGCCGCCGCCATCCGCCACTTCTCCGACGCCATCGCCTTGGCCCCCACCAACCACGTCCTCTACTCCAACCGATCCGCCGCACACGCCTCCCTCCAAAACTACGCCGATGCCTTAGCCGACGCCAAGAAGACGGTCGAACTCAAGCCCGACTGGTCCAAGGGCTACAGCCGACTTGGCGCCGCGCATCTTGGGCTGGCCCAGTACGACGACGCCGTCTCGGCCTACAAAAAGGGCCTCGAAATTGACCCCGCCAACGAGCCCCTTAAGGCGGGCCTGGCCGATGCGCAGAAGGCCAAGTCGGCGGCCTCAAGGCCCCGCTCTTCGGCTACTAACCCCTTCGGCGACGCCTTCTCTGGGCCTGAGATGTGGGCCAGGCTCACCGCCGACCCCACCACTAGGGCCTATCTCCAACAGCCCGATTTCGTCCAGATGATGCAGGATATCCAGAAGGATCCTAATAACCTAAACTTGCACTTGAAGGACCAGAGAGTCATGCAAGCCATTGGAGTTTTGCTCAACGTTAAGATTCAAACCCCTCCCACGGGCGACACCGATATGCCCGATTCTCCGACGCCGCCGCCCTCCGAGAGGAAGAGAGCCGccgaggctgagcccaccaagcaacccgagcctgagcccgagcccgagcccATGGAACTGACGGAGGATGAGAGGAGCGCGAAGCAGAGGAAGGCTGAGGCTCAGAAGGAAAAGGAGGCGGGGAATGCAGCTTACAAGAAGAAGGATTTTGAAACCGCCATTCAACATTACACGACAGCTTTGGAGTTGGATGATGAGGATATTTCGTATCTCACTAACCGCGCTGCTGTCTACTTGGAAATGGGGAAGTATGAGGAATGTATAAAAGATTGTGACAAGGCTGTCGAAAGAGGAAGAGAGCTAAGATCAGATTATAAGATGATAGCTAGAGCATTGACAAGGAAAGGAACTGCCTTGGTGAAAATGGCAAAGATTTCGAAGGATTATGAGCCTGCCATTGAGACTTTCCAGAAAGCACTCACTGAGCACCGCAACCCTGACACTTTGAAGAAACTTAACGAAGCTGAGAAGGCAAAGAAGGAACTAGAACAACAAGAATATTTTGATCCAAAGTTGGCTGACGAGGAAAGAGAGAAAGGAAACGAATTCTTTAAGCAGCAAAAGTATCCTGAGGCTGTGAAGCATTACACAGAGTCTTTACGAAGAAATCCGAAAGATCCTAGGGCTTATAGTAACAGAGCAGCATGCTACACTAAATTGGGAGCAATGCCTGAAGGTTTAAAGGATGCGGAGAAGTGCATTGAACTTGATCCAACCTTCGTAAAGGGTTATACCAGGAAAGGTGCAGTTCAGTATTTCATGAAGGAATATGACAAGGCTTTGGAAACATATAGGGAGGGGTTGAAACTTGATCCTAACAACCAGGAGTTGCTTGAAGGCATTAGAACATGTATACAACAAATCAATAAGGCTAGCCGTGGAGACTTAAGTCCCGAGGAATTGAAAGAGAGACAGGCGAAGGCAATGCAGGATCCAGAAATTCAGAACATCCTCCAAGACCCTGTTATGAGACAGGTGTTGATCGATTTCCAGGAAAATCCCAAGGCTGCACAGGAACACACGAAGAATCCAATGGTGATGAACAAGATCCAAAAGCTGGTCAGTGCTGGAATTGTCCAGATGAGGTAA 1743 0.4945 MADEAKAKGNAAFSSGDYAAAIRHFSDAIALAPTNHVLYSNRSAAHASLQNYADALADAKKTVELKPDWSKGYSRLGAAHLGLAQYDDAVSAYKKGLEIDPANEPLKAGLADAQKAKSAASRPRSSATNPFGDAFSGPEMWARLTADPTTRAYLQQPDFVQMMQDIQKDPNNLNLHLKDQRVMQAIGVLLNVKIQTPPTGDTDMPDSPTPPPSERKRAAEAEPTKQPEPEPEPEPMELTEDERSAKQRKAEAQKEKEAGNAAYKKKDFETAIQHYTTALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDYKMIARALTRKGTALVKMAKISKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEYFDPKLADEEREKGNEFFKQQKYPEAVKHYTESLRRNPKDPRAYSNRAACYTKLGAMPEGLKDAEKCIELDPTFVKGYTRKGAVQYFMKEYDKALETYREGLKLDPNNQELLEGIRTCIQQINKASRGDLSPEELKERQAKAMQDPEIQNILQDPVMRQVLIDFQENPKAAQEHTKNPMVMNKIQKLVSAGIVQMR 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01717 580 Gene3D - 510 580 - -
Cca06g01717 580 SUPERFAMILY TPR-like 251 379 IPR011990 GO:0005515
Cca06g01717 580 Pfam STI1 domain 521 572 IPR041243 -
Cca06g01717 580 Pfam STI1 domain 138 191 IPR041243 -
Cca06g01717 580 MobiDBLite consensus disorder prediction 213 261 - -
Cca06g01717 580 ProSiteProfiles TPR repeat profile. 425 458 IPR019734 GO:0005515
Cca06g01717 580 ProSiteProfiles TPR repeat profile. 391 424 IPR019734 GO:0005515
Cca06g01717 580 ProSiteProfiles TPR repeat region circular profile. 70 103 - -
Cca06g01717 580 ProSiteProfiles TPR repeat profile. 252 285 IPR019734 GO:0005515
Cca06g01717 580 MobiDBLite consensus disorder prediction 195 261 - -
Cca06g01717 580 SUPERFAMILY TPR-like 390 503 IPR011990 GO:0005515
Cca06g01717 580 Coils Coil 236 256 - -
Cca06g01717 580 Gene3D - 128 195 - -
Cca06g01717 580 Gene3D Tetratricopeptide repeat domain 389 504 IPR011990 GO:0005515
Cca06g01717 580 Gene3D Tetratricopeptide repeat domain 1 116 IPR011990 GO:0005515
Cca06g01717 580 ProSiteProfiles TPR repeat profile. 70 103 IPR019734 GO:0005515
Cca06g01717 580 ProSiteProfiles TPR repeat profile. 459 492 IPR019734 GO:0005515
Cca06g01717 580 PANTHER TPR REPEAT CONTAINING PROTEIN 1 579 IPR045248 GO:0006457|GO:0030544|GO:0051879
Cca06g01717 580 ProSiteProfiles TPR repeat profile. 2 35 IPR019734 GO:0005515
Cca06g01717 580 PANTHER HSP70-HSP90 ORGANIZING PROTEIN 3 1 579 - -
Cca06g01717 580 Pfam Tetratricopeptide repeat 71 103 IPR019734 GO:0005515
Cca06g01717 580 ProSiteProfiles TPR repeat region circular profile. 459 492 - -
Cca06g01717 580 Coils Coil 363 383 - -
Cca06g01717 580 Pfam TPR repeat 259 300 - -
Cca06g01717 580 Pfam TPR repeat 398 439 - -
Cca06g01717 580 SMART CBM 529 568 IPR006636 -
Cca06g01717 580 SMART CBM 147 186 IPR006636 -
Cca06g01717 580 Gene3D Tetratricopeptide repeat domain 249 385 IPR011990 GO:0005515
Cca06g01717 580 SUPERFAMILY TPR-like 2 114 IPR011990 GO:0005515
Cca06g01717 580 MobiDBLite consensus disorder prediction 110 138 - -
Cca06g01717 580 SMART tpr_5 2 35 IPR019734 GO:0005515
Cca06g01717 580 SMART tpr_5 425 458 IPR019734 GO:0005515
Cca06g01717 580 SMART tpr_5 391 424 IPR019734 GO:0005515
Cca06g01717 580 SMART tpr_5 252 285 IPR019734 GO:0005515
Cca06g01717 580 SMART tpr_5 70 103 IPR019734 GO:0005515
Cca06g01717 580 SMART tpr_5 286 319 IPR019734 GO:0005515
Cca06g01717 580 SMART tpr_5 459 492 IPR019734 GO:0005515
Cca06g01717 580 SMART tpr_5 327 364 IPR019734 GO:0005515
Cca06g01717 580 SMART tpr_5 36 69 IPR019734 GO:0005515
Cca06g01717 580 Pfam Tetratricopeptide repeat 460 492 IPR001440 GO:0005515
Cca06g01717 580 Pfam Tetratricopeptide repeat 7 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01717 Cca-Chr6 32487903 32492381 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01717 390 488 U-box Gene Family AT3G07370 28.283 5.05e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01717 K09553 - gmx:100816776 978.393