Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01695 ATGATGGCTTCACTCTTGGTGTCACTGCAAGTAGTGCTAGTTGTGGTATTCACTTGCACAGTTCATGCAGCAACAGTGACACGTGCACGCCACCACGAGCGTACCTTGAGAATATTCTCTTCAAGTTCAACCAACTCCTCCAACAACCACCATTGGGTAGGACCCGTCGGCCACCGTGTAATCACCGTTGACATAAACGGCGGCGGGTACTTCCGGTCCGTCCAAGACGCCGTGAACGCCGTTCCCGACAACAACCGAAAGAACGTGGTTATTCAAATCAGTGCGGGATGCTACATAGAGAAGGTGGTTGTGCCCGTGACGAAGCCGTACATAACGTTTTGGGGCGCGGGTAGGGAAGTGACGGTGATAGAATGGCATGATCGAGCGAGTGACCCTGGTCCCAGTGGACAACAATTGCGTACTTACAGAACTGCTTCTGTTACTGTTTTTGCCAGCTATTTTTCTGCCAGAAACATCAGCTTCAAGAACACAGCGCCGGCACCAATGCCGGGGATGCAGGGATGGCAAGCGGCGGCGTTTCGCATATCGGGCGACAAAGCATACTTCTCCGGCTGCGGCTTCTACGGCGCACAAGACACGCTTTGCGACGATGCAGGCAGGCATTACTTCAAGGAATGCTACATCGAGGGATCCATCGATTTCATATTTGGGAATGGAaggtctatgtacaagGATTGCGTGCTACACTCGATAGCCACGAGGTTCGGTTCCATAGCGGCCCAAGATAGGAAACGAGAATACGAGAAGACAGGATTTGCATTCGTACGGTGCAGGGTCACAGGTACGGGCCCACTATACGTGGGCCGAGCAATGGGACAGTACTCCAGAATTGTCTACTCTTACACATATTTCGATGACATAGTTGCACATGGCGGTTGGGATGACTGGGACCATGTCGACAATAAGAACAAGACTGTTTTCTTCGGAGTCTACAAGTGTTGGGGACCAGGAGCAGAGGCTGTGCGTGGAGTTTCATGGGCCCGAGAGTTAGATTTTCAATCGGCCCATCCATTTATCAGGAAGAGCTTCGTCAATGGCAGACACTGGATCGCCCCATCTGATGCTTAA 1089 0.5115 MMASLLVSLQVVLVVVFTCTVHAATVTRARHHERTLRIFSSSSTNSSNNHHWVGPVGHRVITVDINGGGYFRSVQDAVNAVPDNNRKNVVIQISAGCYIEKVVVPVTKPYITFWGAGREVTVIEWHDRASDPGPSGQQLRTYRTASVTVFASYFSARNISFKNTAPAPMPGMQGWQAAAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCVLHSIATRFGSIAAQDRKREYEKTGFAFVRCRVTGTGPLYVGRAMGQYSRIVYSYTYFDDIVAHGGWDDWDHVDNKNKTVFFGVYKCWGPGAEAVRGVSWARELDFQSAHPFIRKSFVNGRHWIAPSDA 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01695 362 Pfam Pectinesterase 61 353 IPR000070 GO:0030599|GO:0042545
Cca06g01695 362 SUPERFAMILY Pectin lyase-like 58 359 IPR011050 -
Cca06g01695 362 ProSitePatterns Pectinesterase signature 2. 215 224 IPR033131 -
Cca06g01695 362 PANTHER PECTINESTERASE 68-RELATED 17 361 - -
Cca06g01695 362 Gene3D - 57 361 IPR012334 -
Cca06g01695 362 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 17 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01695 Cca-Chr6 32211483 32215301 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01695 6 362 Carbohydrate Esterase AT5G47500 72.576 0.0 540
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01695 - - gmx:100816190 659.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01695 06 32211483 32215301 Cca06g01695 06 32211483 32215301 ECH
Cca06g01695 06 32211483 32215301 Cca11g01602 11 39777010 39780623 PCT