Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01692 ATGGAGAGGCACAAATGCAAGCTCTGCTCCAGAACATTCTCTAATGGCAGAGCACTCGGTGGCCACATGAAGTCTCACTTAGCCACCCTTCCTCTTCCGCCCAAACCCCAGCCTTGTAATTCCTCTTCTTGGgaagatgaagatgaagatgaagatgaagaAAAGGCTCTGATTTATTATGGGCTGCGAGAGAATCCAAAGAAATGTTTCAGACTCGCAGATCCCGAGTTCGACACGGGCTCCGTCGTTCAAGACAGAGAGAGCGAGACCGAGTCAAAGAACCCAACAGGCCGACGATCCAAGCGGACCCGACGGCCCGCCAACTTGGACCAGCCCAAGAGGCCCAAACTGAGCTTCATGGAGTCGCCAGAGCCTCCCGCCCTCAGTTCGGTCTCCGACACTTCCCCCGAGGAAGACGTTGCCATGTGTCTCATGATGCTGTCCAGGGACCGGTGGATTAACAACACCACCCATGTTAACGTTAATGCTGTCGCGGCCCAGGGATCAGATGAGATCAAGCTCACCAGAGTCCGCGGCAACCACCACCGCTGTCACGGCTGTCACAAAACCTTTCGATCTTCACGCGCATTGGACAGTCACACAAGCGTTTGCCAAGGCTTGGGTAACCATAATAATAAAATCTACCAATGCCCCTTTTGTTCTAAGGTGTTTGGGTCCGGTCAAGCACTCGGTGGACACAAGAGATCTCACCTTGTGCCTTCTTCCTCCTCAAACCTTCAACTCAAAGAGAGCTTCATAGATCTCAATTTGCCTGCTCCTGCTGACGAAGACGACCTTAGCGTTCTTTCTGATGCATGA 819 0.5104 MERHKCKLCSRTFSNGRALGGHMKSHLATLPLPPKPQPCNSSSWEDEDEDEDEEKALIYYGLRENPKKCFRLADPEFDTGSVVQDRESETESKNPTGRRSKRTRRPANLDQPKRPKLSFMESPEPPALSSVSDTSPEEDVAMCLMMLSRDRWINNTTHVNVNAVAAQGSDEIKLTRVRGNHHRCHGCHKTFRSSRALDSHTSVCQGLGNHNNKIYQCPFCSKVFGSGQALGGHKRSHLVPSSSSNLQLKESFIDLNLPAPADEDDLSVLSDA 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01692 272 Pfam C2H2-type zinc finger 215 237 - -
Cca06g01692 272 Pfam C2H2-type zinc finger 3 28 - -
Cca06g01692 272 Gene3D Classic Zinc Finger 179 247 - -
Cca06g01692 272 MobiDBLite consensus disorder prediction 80 111 - -
Cca06g01692 272 ProSitePatterns Zinc finger C2H2 type domain signature. 217 237 IPR013087 -
Cca06g01692 272 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Cca06g01692 272 ProSiteProfiles Zinc finger C2H2 type domain profile. 215 237 IPR013087 -
Cca06g01692 272 SUPERFAMILY beta-beta-alpha zinc fingers 3 29 IPR036236 -
Cca06g01692 272 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Cca06g01692 272 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 272 - -
Cca06g01692 272 SUPERFAMILY beta-beta-alpha zinc fingers 211 238 IPR036236 -
Cca06g01692 272 MobiDBLite consensus disorder prediction 80 135 - -
Cca06g01692 272 MobiDBLite consensus disorder prediction 26 55 - -
Cca06g01692 272 SMART c2h2final6 182 202 IPR013087 -
Cca06g01692 272 SMART c2h2final6 215 237 IPR013087 -
Cca06g01692 272 SMART c2h2final6 4 26 IPR013087 -
Cca06g01692 272 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 272 IPR044303 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01692 Cca-Chr6 32183158 32184408 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01692 1 269 C2H2 Transcription Factor Family AT3G60580 35.275 3.32e-44 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca06g01692 zf-C2H2_6 2.9e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01692 - - vun:114173003 374.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01692 06 32183158 32184408 Cca11g01598 11 39727549 39728925 PCT