Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01677 ATGGGTGCCTACAAGTATGTTTCAGAGTTATGGCGCAAGAAGCAGTCTGATGTCATGCGCTTCTTGCAGCGTGTGAGGTGCTGGGAGTACAGGCAGCAACCTTCCATTGTTCGTTTAACAAGGCCTACTCGCCCAGATAAGGCTCGTCGCTTGGGCTATAAGGCTAAGCAGGGTTATGTGGTTTACCGTGTTCGTGTTCGGAGGGGTGGCCGCAAGAGACCAGTTCCCAAGGGTATTGTTTATGGGAAGCCAACAAACCAGGGTGTTACTCAATTGAAATTTCAGCGGAGCAAGAGGTCAGTTGCTGAGGAGCGAGCAGGACGGAAGCTGGGTGGACTTAGGGTCCTCAACTCTTATTGGGTGAATGAGGATTCTACTTATAAGTACTTTGAGGTAATTCTGGTAGATGTTGCTCATACTGCTGTTAGAAATGACCCGAGAATCAACTGGCTCTGCAATCCAGTGCATAAGCACAGGGAGCTGCGTGGGCTCACCTCTGCTGGGAAAAGCAACAGGGGTTTACGGGGCAGAGGGCATTTGTACCACAAAGCACGTCCATCCCGCAGGGCAACCTGGAAGAGAAACAACACCCTGTCCCTTCGCCGTTACCGTTAA 615 0.5106 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWVNEDSTYKYFEVILVDVAHTAVRNDPRINWLCNPVHKHRELRGLTSAGKSNRGLRGRGHLYHKARPSRRATWKRNNTLSLRRYR 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01677 204 Pfam Ribosomal L15 2 190 IPR000439 GO:0003735|GO:0005840|GO:0006412
Cca06g01677 204 PANTHER RIBOSOMAL PROTEIN L15 1 204 IPR000439 GO:0003735|GO:0005840|GO:0006412
Cca06g01677 204 SMART Ribosomal_L15e_2 2 193 IPR000439 GO:0003735|GO:0005840|GO:0006412
Cca06g01677 204 PANTHER RIBOSOMAL PROTEIN L15 1 204 - -
Cca06g01677 204 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 1 195 IPR012678 GO:0003735|GO:0005840|GO:0006412
Cca06g01677 204 ProSitePatterns Ribosomal protein L15e signature. 46 69 IPR020925 GO:0003735|GO:0005840|GO:0006412
Cca06g01677 204 Gene3D Ribosomal protein l15e 1 204 IPR024794 GO:0003735|GO:0005840
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01677 Cca-Chr6 32043484 32045740 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01677 1 204 Cytoplasmic Ribosomal Protein Gene Family AT4G16720 91.667 2.93e-127 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01677 K02877 - gmx:100810310 393.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01677 06 32043484 32045740 Cca06g01677 06 32043484 32045740 ECH
Cca06g01677 06 32043484 32045740 Cca11g01589 11 39612491 39615155 PCT