Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01676 ATGGCAACCCACAAGAATGATGAAACGGCCAAGAAAACCAACAACAGAGGAGCATGGACTTCAGAGGAAGATCAGAAACTTGCGCAATGCATTGAAATTCACGGTGCTAAGAGGTGGAAAACTGTTGCAATTAAATCAGGTTTAAACAGATGTGGAAAAAGTTGCAGGCTGAGGTGGTTGAACTATCTTAGACCCAACATCAAGAGGGGCAACATATCAGTTGAAGAAGAGGATTTGATTATTAGGCTTCACAAACTACTGGGAAACAGGTGGTCTTTGATAGCTAAGAGGCTTCCAGGACGAACAGACAATGAAATAAAGAACTACTGGAATACTTGTTTGTGCAAAAAAGTTAATCACACAAAGGTGAAAGCAGAAACTTCAATGGCACAACCAACACATTCGACTCAGAATAATACTGAGGAAAGAGCAGTGGTAGAGAATAAAGAGGCCAATGATGGGAGTGGGGACTCGGAAGTTAACTTTGATGTGAATGAATTCTTCAACTTCTCCATGGAAGGACTCTATGCGTTGGATTGGATGATATCTAGCTAG 555 0.4126 MATHKNDETAKKTNNRGAWTSEEDQKLAQCIEIHGAKRWKTVAIKSGLNRCGKSCRLRWLNYLRPNIKRGNISVEEEDLIIRLHKLLGNRWSLIAKRLPGRTDNEIKNYWNTCLCKKVNHTKVKAETSMAQPTHSTQNNTEERAVVENKEANDGSGDSEVNFDVNEFFNFSMEGLYALDWMISS 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01676 184 Pfam Myb-like DNA-binding domain 69 113 IPR001005 -
Cca06g01676 184 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Cca06g01676 184 Gene3D - 72 147 - -
Cca06g01676 184 MobiDBLite consensus disorder prediction 1 20 - -
Cca06g01676 184 SMART sant 68 116 IPR001005 -
Cca06g01676 184 SMART sant 15 65 IPR001005 -
Cca06g01676 184 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 4 181 - -
Cca06g01676 184 CDD SANT 73 112 IPR001005 -
Cca06g01676 184 Gene3D - 16 68 - -
Cca06g01676 184 PANTHER TRANSCRIPTION FACTOR MYB114-LIKE 4 181 - -
Cca06g01676 184 MobiDBLite consensus disorder prediction 126 157 - -
Cca06g01676 184 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Cca06g01676 184 MobiDBLite consensus disorder prediction 126 142 - -
Cca06g01676 184 CDD SANT 18 63 IPR001005 -
Cca06g01676 184 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Cca06g01676 184 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Cca06g01676 184 SUPERFAMILY Homeodomain-like 15 110 IPR009057 -
Cca06g01676 184 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01676 Cca-Chr6 32035852 32037166 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01676 16 132 MYB Transcription Factor Family AT5G40330 61.157 4.29e-50 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca06g01676 Myb_DNA-binding 8.7e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01676 K09422 - gmx:100791381 330.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01676 06 32035852 32037166 Cca11g01584 11 39512102 39514504 PCT