Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01673 ATGGAAGAGAATAACAAGAAAAAGAAGAGAATCAGTGATGGGAATCATCATCATCACCCAACGTATCGCGGGGTGCGCATGCGCCAGTGGGGGAAATGGGTATCGGAAATTAGAGAGCCCAAAAAGAAGTCCAGAATATGGCTCGGCACTTTTCCTACGCCCGAGATGGCCGCCCGAGCCCACGACGTTGCGGCCCAAGCTATCAAAGGCTCATCCGCATTCCTCAATTTCCCCGAATTAGCCTCACACCTTCCACGCCCACCCACCACTTCTCCCAAGGATATCCAAGCCGCCGCCGCCAAAGCAGCCGCACTCAATTGTGAGGCCCAGGCCCAGGCCCAACAATCGTCAAATGCGTCGCTAAGCGGTGAGGATGACGCGTTCTTGGACCTTCCTGATCTTTTAATGGACTCGGGTCAGTTTCGTTACTCGTCGCCGTGGCTGGTGGTCGGAGCTGAACATCTAGACTCGGCTTTCCACATCGAAGAGCCTCCGTTCCCTTGGGACTGTTACTAA 516 0.5446 MEENNKKKKRISDGNHHHHPTYRGVRMRQWGKWVSEIREPKKKSRIWLGTFPTPEMAARAHDVAAQAIKGSSAFLNFPELASHLPRPPTTSPKDIQAAAAKAAALNCEAQAQAQQSSNASLSGEDDAFLDLPDLLMDSGQFRYSSPWLVVGAEHLDSAFHIEEPPFPWDCY 171
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01673 171 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 8 142 - -
Cca06g01673 171 CDD AP2 22 80 IPR001471 GO:0003700|GO:0006355
Cca06g01673 171 SMART rav1_2 21 84 IPR001471 GO:0003700|GO:0006355
Cca06g01673 171 Gene3D AP2/ERF domain 21 79 IPR036955 GO:0003700|GO:0006355
Cca06g01673 171 ProSiteProfiles AP2/ERF domain profile. 21 78 IPR001471 GO:0003700|GO:0006355
Cca06g01673 171 Pfam AP2 domain 20 70 IPR001471 GO:0003700|GO:0006355
Cca06g01673 171 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700|GO:0006355
Cca06g01673 171 PRINTS Ethylene responsive element binding protein signature 44 60 IPR001471 GO:0003700|GO:0006355
Cca06g01673 171 SUPERFAMILY DNA-binding domain 21 79 IPR016177 GO:0003677
Cca06g01673 171 MobiDBLite consensus disorder prediction 1 23 - -
Cca06g01673 171 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF043 8 142 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Cca06g01673 Cca-Chr6 32021418 32022014 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01673 8 166 AP2-EREBP Transcription Factor Family AT2G44940 47.143 1.84e-51 164
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca06g01673 AP2 5.6e-14 CL0081
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01673 - - gmx:100817503 219.55
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01673 06 32021418 32022014 Cca11g01581 11 39403371 39403646 PCT