Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01669 ATGACGCTTCAAAAAGAAGCTCATTTGGGTTTGACCCTAAGCCTCCACCCTTTCACTTCTTCAGGTGAGGCTGGATCATTCCTCCGCGGAATCGACGTGAACCGGTTACCTTCCGCCGTTGACTGCGAAGACGAAGCGGGTGTTTCATCTCCCAACAGCACCGTTTCCAGCGTCAGCGGAAAGCGCAGCGAAAGGGACCCCAATGGGGAAGACCAGGACACCGACAGAGCCTGTTCCAGAGGCATCAGCGACGAAGAAGAGGCCGAAACCACTCGGAAGAAGCTTAGACTCTCCAAAGACCAATCCATAATCCTCGAAGAGAGCTTCAAGGAACACAACACTCTTAACCCCAAGCAAAAGCTCGCACTCGCCAAACAGCTTGGTCTCCGACCAAGACAAGTGGAGGTGTGGTTCCAAAACAGAAGGGCAAGGACTAAGCTGAAGCAAACGGAAGTGGACTGCGAGTTTTTGAAAAGGTGCTGCGAGAATCTCACGGAGGAAAACAGAAGGTTGCAGAAGGAAGTGCAGGAGTTGAGAGCACTCAAACTTTCCCCGCAGTTCTACATGCACATGACCCCACCCACCACTCTTACCATGTGCCCCTCTTGCGAGCGCGTCGCGGTTCCTCCCTCCGCCGTCGATTCTGTCTCTGCCACGCGTCACCATCACGTCCCTCGCGCTTTCCCTCTTGGCCCATGGGCCTCCTCTGTTCCACACAGGCCCTTCGATGCCCTCCGTCCCAGATCTTGA 750 0.5493 MTLQKEAHLGLTLSLHPFTSSGEAGSFLRGIDVNRLPSAVDCEDEAGVSSPNSTVSSVSGKRSERDPNGEDQDTDRACSRGISDEEEAETTRKKLRLSKDQSIILEESFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQFYMHMTPPTTLTMCPSCERVAVPPSAVDSVSATRHHHVPRAFPLGPWASSVPHRPFDALRPRS 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01669 249 ProSitePatterns 'Homeobox' domain signature. 123 146 IPR017970 GO:0000981|GO:0006355
Cca06g01669 249 Pfam Homeobox associated leucine zipper 148 182 IPR003106 GO:0006355|GO:0043565
Cca06g01669 249 PRINTS Lambda-repressor HTH signature 119 128 IPR000047 GO:0003677
Cca06g01669 249 PRINTS Lambda-repressor HTH signature 128 144 IPR000047 GO:0003677
Cca06g01669 249 ProSiteProfiles 'Homeobox' domain profile. 88 148 IPR001356 GO:0003677
Cca06g01669 249 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 18 240 - -
Cca06g01669 249 Gene3D - 96 146 - -
Cca06g01669 249 MobiDBLite consensus disorder prediction 63 94 - -
Cca06g01669 249 SMART halz 148 191 IPR003106 GO:0006355|GO:0043565
Cca06g01669 249 SMART HOX_1 90 152 IPR001356 GO:0003677
Cca06g01669 249 Pfam Homeodomain 92 146 IPR001356 GO:0003677
Cca06g01669 249 MobiDBLite consensus disorder prediction 42 94 - -
Cca06g01669 249 PANTHER - 18 240 - -
Cca06g01669 249 Coils Coil 147 184 - -
Cca06g01669 249 CDD homeodomain 92 149 IPR001356 GO:0003677
Cca06g01669 249 SUPERFAMILY Homeodomain-like 82 149 IPR009057 -
Cca06g01669 249 MobiDBLite consensus disorder prediction 47 62 - -
Cca06g01669 249 Pfam HD-ZIP protein N terminus 20 66 IPR006712 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01669 Cca-Chr6 31943094 31944143 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01669 1 249 Homeobox Transcription Factor Family AT5G47370 62.406 7.00e-103 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Cca06g01669 Homeodomain 5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01669 K09338 - gmx:547858 392.889
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01669 06 31943094 31944143 Cca11g01571 11 39258940 39260843 PCT