Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01665 ATGGAACTTAATTTTAAGCACCAACTTGGCCTTCTCTGTGTCACACTGCTGTTACCTGTCCTGTGTACCTCTCAGGACTCTTTTACTTGCTCCAGAGCAACCTATTATGGTAGCCCAGATTGTTATGGAAATCCAAGGGGAGCTTGTGGCTTTGGTGAATATGGAAAAACGGTAAACGATGGCAATGTCGCAGGCGTGTCTTGGCTTTGGAAGAATGGATCTGGCTGTGGAGCATGTTATCAGGTTAGGTGCAAAATACCACAATTCTGCGATGACTATGGAGCATACGTGGTGGTGACAGATTATGGTGAGGGAGACAGAACAGACTTTATAATGAGTCCACGTGCCTACTCAAGATTAGGGAGAAACGCAGATGCATCAGCAGAACTGTTTAAATACGGTGTAGTGGATGTAGAATACAGAAGGGTCCCTTGTAGATACGGTGGCAATAACCTCTTGGTTAAAGTCAATGAGCACAGCAGAAACCCTCACTACTTGGCCATTCTCATTCTTTATGTTGGTGGAACTTACGACGTAACTGCTGTTGAGTTGTGGCAGGAAGACTGCCAAGAGTGGAGGCGAATGCGCAGGGCTTTTGGTACTGTGTTTGACGCTGAGAACCCGCCAAGGGGTGACATCAAGCTGAGGTTTCAACTGAGTGGTAATGCAGAGCAGTATTGGGTGCAATCGAAGAATGTTATCTCTAGTGATTGGGAGGCTGGGGCTGTGTATGACTCAGAAATTCAGCTTGTTAAAGAACCTGAAGATCAGAAGCTTGAGCGGGGCAATCTAGCTCTGAAGAACAGTAGTAAGGAAAAGAATCCTGTTAGGGTGATACGTGGCACTGAATCGATGGATGGAAAGTGCAAGACATATGTTTATGATGGACTGTATGAAGTTGAGTCATGTTGGCAGGATGTGGGACCACATGGGAAGCTGGTTTTTAAGTTTCGTCTGCGAAGAATCCCTGGTCAACCAGAGCTTGCTTTGAAAGAAGTGAAGAAATCTAAGAAGTTCAAGACAAGAGAAGGTGTATGTCTTGATGATATTTCTTATGGAAAACATCGAATTCCCATATGTGCTGTGAACACCATAGATGATGAAAAACCCCCACAGTTTAATTACATAACTAGTATGATATACCCCAATTGTCGTCTTGATGATCTAGAAGGATGTGATTGTACTAATGGATGCTCTGACTTTTAA 1206 0.4403 MELNFKHQLGLLCVTLLLPVLCTSQDSFTCSRATYYGSPDCYGNPRGACGFGEYGKTVNDGNVAGVSWLWKNGSGCGACYQVRCKIPQFCDDYGAYVVVTDYGEGDRTDFIMSPRAYSRLGRNADASAELFKYGVVDVEYRRVPCRYGGNNLLVKVNEHSRNPHYLAILILYVGGTYDVTAVELWQEDCQEWRRMRRAFGTVFDAENPPRGDIKLRFQLSGNAEQYWVQSKNVISSDWEAGAVYDSEIQLVKEPEDQKLERGNLALKNSSKEKNPVRVIRGTESMDGKCKTYVYDGLYEVESCWQDVGPHGKLVFKFRLRRIPGQPELALKEVKKSKKFKTREGVCLDDISYGKHRIPICAVNTIDDEKPPQFNYITSMIYPNCRLDDLEGCDCTNGCSDF 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01665 401 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Cca06g01665 401 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Cca06g01665 401 PRINTS Expansin/Lol pI family signature 192 206 IPR007118 GO:0005576
Cca06g01665 401 PRINTS Expansin/Lol pI family signature 133 149 IPR007118 GO:0005576
Cca06g01665 401 PRINTS Expansin/Lol pI family signature 232 246 IPR007118 GO:0005576
Cca06g01665 401 Gene3D SET domain 350 401 IPR046341 -
Cca06g01665 401 PANTHER EXPANSIN-B1-LIKE PROTEIN 4 250 - -
Cca06g01665 401 SUPERFAMILY PUA domain-like 251 352 IPR015947 -
Cca06g01665 401 SUPERFAMILY PHL pollen allergen 151 246 IPR036749 -
Cca06g01665 401 Pfam SAD/SRA domain 252 325 IPR003105 -
Cca06g01665 401 SUPERFAMILY SET domain 337 400 IPR046341 -
Cca06g01665 401 Gene3D - 20 145 IPR036908 -
Cca06g01665 401 PANTHER EXPANSIN-B3 4 250 - -
Cca06g01665 401 SUPERFAMILY Barwin-like endoglucanases 13 150 IPR036908 -
Cca06g01665 401 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 150 IPR007112 -
Cca06g01665 401 Pfam Lytic transglycolase 63 140 IPR009009 -
Cca06g01665 401 Gene3D - 146 243 IPR036749 -
Cca06g01665 401 Pfam Expansin C-terminal domain 154 234 IPR007117 -
Cca06g01665 401 ProSiteProfiles YDG domain profile. 149 321 IPR003105 -
Cca06g01665 401 SMART G9a_1 195 325 IPR003105 -
Cca06g01665 401 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 164 246 IPR007117 -
Cca06g01665 401 Gene3D - 244 349 IPR036987 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01665 Cca-Chr6 31895051 31900321 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01665 3 250 Expansin Gene Family AT4G17030 61.355 4.54e-110 321
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01665 - - gmx:100802855 500.36