Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01664 ATGACAACACCTGTCAATAATGGTCATTCTGAAAAAAGCTATGAGAAGTCAGCGATGGAAAATGGGGAGCATGTTTTCCTTCCTAGGCCTATGTATAAGCGGCGTAAGGTTTCTGCCATACGTGATTTTCCAGATGGATGTGGACCATTTGCTTTAAGGATTGATCCAGTCTTAAATGTAAATAATGTGGGTTGTGGTTCTCTTAATGGTATAATTGCTGAGGATAAGAATGGTGAACATTTAGGGGGTGATATTCTTGAAACATCCGAGTGTGAAAACAATGGTCAACATTCTGAGTTAAAAGATTCGCATCTTATTGAGACTCTTGGCCAAAAAATTGACTGTGGTTTAAATAAGGAAAACCATGCGGTCTCATCTTATCAAGTGGATGGGCCTACTGCAGAAAATGAACCTGCAAAAGTGAGTCTTGGCCAAACAACTGACTATGGTTTGAATAATGAAAACCCTGTGATCTCATCTCATAAAGTGGATGGGCCTACTGTAGAAGATGAAGCTGCGAAAGTGACTATTGGCCAAACATTTGATAGCAGTTTGAATCAGGAAACCCCAGTGGTCTCATCTCATCATCTGGATGGGTCTATTGCAGAAGATGAACCTGCAAAAGTGATGCTTGGTCAAAAAACTGACTCTGGTTTGAATCAGGAAAACCCTGTGGTCTCATGTCATCAAGTGGACGAGCCTACTGCTGAAGATGGACATGTAAAAGTGCCATTAGTGGACGTGGAAATTTTGAATACAGAGTCTGCAATAACCGTAAACACTGTAAAATGTGACTCCTCTTATATGTTGAAGTCATATTCCCCGGGTGAGTTGGCTATGTTAAGTGGTTCAGAGCCCTTATCATTCAATGTCAACATATCTGGTTCCCATGCTTGCATGGTGGAGCCTGTAACTAGAAGGTATCTTCCTCGTCGAAAAGTTTCAGCTGTTAGAAACTTCCCTCTTTCATGTGGACGCAATGTCACATGTCTCAGTAAGAATGTGTGTCTAGAGGGGATCCCTTCGGAAAACAAAAAAGTGGGTCAACAGAGCCTTGCTGTAGATGACAGTCCATTGAAAAAGGTAGCAGCCACTGATGCGAAAGAAGTTAAAGATAACATTCAAGATGAATATGGTTGCAAGAGAAAGCTTGTGGACATTGTTCAAACTGATTCTGAAAGGAATGCTGTAGAGAGAGTGAAGAAGCTGCATGTATTTGAATCATCATCTGAGATGAAAATGCTTCCGGAAAACAAGAGACAAAAGTACGTTACACTTCCTGAAAAAAGCAATCATCGTCAGGTTAAAATAAATTCAAAGGTGGTGGGAGAAGAGGAAAATAGGGATGGTGTACCAGTTGACAAAACATCAGGGCTAGAGATATTTGTTCACCCTGTCCAAAGTCTCAAGACAAAGCCTTTGAATATGTCTCGTTCTAAGCAAAAGTTGAAGGAAAATTTCAATAGATTGCAGGTCTCATCAGACAGGAAAGTAGTGCTAGGTTTGATGGCTAAATCTGAATGTCCTTGGAGTTCTGATAAAGGTTCCTCCAAATTTAAGTTGGTTGGTGGTAAAAATGAAGGCAAGAGAAAGAAAGTGGTTTCTTTTGCATCATCTGACAGTTCTAAAACAGCTATCAAGACTAAAGGTGCACCAAATCATTCTGGGCAGAAGCCTTTGAAAAAGAAAAAGGGGAATGCTGCTTCAGGAGGTATGGATGAATTATTAATTTGGGAAAAGGAAGATTGTCTTGACCATGCTAAAAATAATGAAGACCTACAAATTGTTTTGAAATCTGATTTCGATGTAAATGTTACTCCCTATACTCATTCTAATTCCACTGGTGATGAGAATGATGCAAATGTGACCCGTAAAAAGGTGAGGGAAACATTACAGTTATTTCAAGTTGTTTCTAGAAAGCTTTTACGGGAAGTAGAATCAAAGCTAAATGAGCGAGCAAATGGTAAGAGGATTGATTTACATGCTGCAAGGATCCTTAAGGAGAATGGGAAATATGTTAACTTAGGCAAGCAGATACTGGGTTCTGTCCCCGGGGTTGAAGTTGGTGATGAATTTCAATATAGGGTGGAGCTTAATATAGTTGGTCTTCATCGTCAGATTCAGGGTGGTATAGATTATGTGAAGCACGATGGTAAGATCCTTGCAACTAGTATTGTTGCGTCAGGTGGCTATGCAGATGATTTGGATAATTCAGATGTCTTGATATATACAGGGCAGGGTGGGAATGTGATGAACAATGATAAAGAACCTGAAGATCAGAAGCTTGAGCGGGGCAATCTAGCTCTGAAGAACAGTAGTAAGGAAAAGAATCCTGTTAGGGTGATACGTGGCACTGAATCGATGGATGGAAAGTGCAAGACATATGTTTATGATGGACTGTATGAAGTTGAGTCATGTTGGCAGGATGTGGGACCACATGGGAAGCTGGTTTTTAAGTTTCGTCTGCGAAGAATCCCTGGTCAACCAGAGCTTGCTTTGAAAGAAGTGAAGAAATCTAAGAAGTTCAAGACAAGAGAAGGTGTATGTGTTGATGATATTTCTTATGGAAAAGAACGAATTCCCATATGTGCTGTGAACACCATAGATGATGAAAAACCCCCACAGTTTAATTACATAACTAGTATGATATACCCCAATTGTCGTCTTGATGATCCAGAAGGATGTGATTGTACTAATGGATGCTCTGACTTAGGGAAATGCTCATGTGGAGTGAAAAATGGGGGAGAGATCCCATTCAATCACAATGAGGCTATTGTACAAGCAAAACCTCTAGTCTATGAGTGTGGTCCTACTTGTAAGTGTCCTTCAACATGCCACAATAGAGTCAGTCAACTTGGCATAAAGTTTCAACTTGAAATTTTCAAAACCAGTACAAGGGGATGGGGTGTGAGATCCCTGAATTCAATCCCTTCGGGAAGTTTTATCTGCGAATATATAGGAGAGCTTCTTGAAGACAAGGAAGCTGAACAAAGAACTGGTAATGACGAGTATCTTTTTGATATTGGAAATAACTTCGGCAACAACACTCTTTTGGATGAACTTTTGACTGTCATGCCTGATGCACAGACAAGTTCCTGTGAAGTTGTGAAGGATGGTGGGTTCACCATTGACGCTGCTCAGTTTGGTAACGTGGGTAGATTCATTAATCATAGTTGCTCCCCTAATCTTTATGCTCAGAATGTCCTTTATGATCATCATGACAACAGAATGCCTCACATAATGTTCTTTGCTGCTGAGAATATTCCTCCCTTACAAGAGCTGACTTACGATTATAATTATGCAATAGATCAAGTCCGTGATTCTGATGGCAATGTAAAAAAGAAGTATTGCTATTGTGGTTCCGTGGAATGCACTGGCAGGATGTATTGA 3390 0.4024 MTTPVNNGHSEKSYEKSAMENGEHVFLPRPMYKRRKVSAIRDFPDGCGPFALRIDPVLNVNNVGCGSLNGIIAEDKNGEHLGGDILETSECENNGQHSELKDSHLIETLGQKIDCGLNKENHAVSSYQVDGPTAENEPAKVSLGQTTDYGLNNENPVISSHKVDGPTVEDEAAKVTIGQTFDSSLNQETPVVSSHHLDGSIAEDEPAKVMLGQKTDSGLNQENPVVSCHQVDEPTAEDGHVKVPLVDVEILNTESAITVNTVKCDSSYMLKSYSPGELAMLSGSEPLSFNVNISGSHACMVEPVTRRYLPRRKVSAVRNFPLSCGRNVTCLSKNVCLEGIPSENKKVGQQSLAVDDSPLKKVAATDAKEVKDNIQDEYGCKRKLVDIVQTDSERNAVERVKKLHVFESSSEMKMLPENKRQKYVTLPEKSNHRQVKINSKVVGEEENRDGVPVDKTSGLEIFVHPVQSLKTKPLNMSRSKQKLKENFNRLQVSSDRKVVLGLMAKSECPWSSDKGSSKFKLVGGKNEGKRKKVVSFASSDSSKTAIKTKGAPNHSGQKPLKKKKGNAASGGMDELLIWEKEDCLDHAKNNEDLQIVLKSDFDVNVTPYTHSNSTGDENDANVTRKKVRETLQLFQVVSRKLLREVESKLNERANGKRIDLHAARILKENGKYVNLGKQILGSVPGVEVGDEFQYRVELNIVGLHRQIQGGIDYVKHDGKILATSIVASGGYADDLDNSDVLIYTGQGGNVMNNDKEPEDQKLERGNLALKNSSKEKNPVRVIRGTESMDGKCKTYVYDGLYEVESCWQDVGPHGKLVFKFRLRRIPGQPELALKEVKKSKKFKTREGVCVDDISYGKERIPICAVNTIDDEKPPQFNYITSMIYPNCRLDDPEGCDCTNGCSDLGKCSCGVKNGGEIPFNHNEAIVQAKPLVYECGPTCKCPSTCHNRVSQLGIKFQLEIFKTSTRGWGVRSLNSIPSGSFICEYIGELLEDKEAEQRTGNDEYLFDIGNNFGNNTLLDELLTVMPDAQTSSCEVVKDGGFTIDAAQFGNVGRFINHSCSPNLYAQNVLYDHHDNRMPHIMFFAAENIPPLQELTYDYNYAIDQVRDSDGNVKKKYCYCGSVECTGRMY 1129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01664 1129 SMART set_7 956 1105 IPR001214 GO:0005515
Cca06g01664 1129 Gene3D SET domain 845 1129 IPR046341 -
Cca06g01664 1129 Pfam Pre-SET motif 853 948 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Cca06g01664 1129 SUPERFAMILY PUA domain-like 662 837 IPR015947 -
Cca06g01664 1129 SMART preset_2 850 940 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Cca06g01664 1129 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 494 1129 IPR025794 GO:0016571
Cca06g01664 1129 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH6-LIKE ISOFORM X1 579 1128 - -
Cca06g01664 1129 Gene3D - 663 844 IPR036987 -
Cca06g01664 1129 Pfam SET domain 967 1099 IPR001214 GO:0005515
Cca06g01664 1129 MobiDBLite consensus disorder prediction 537 551 - -
Cca06g01664 1129 ProSiteProfiles YDG domain profile. 681 824 IPR003105 -
Cca06g01664 1129 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 579 1128 - -
Cca06g01664 1129 SMART G9a_1 676 828 IPR003105 -
Cca06g01664 1129 ProSiteProfiles Pre-SET domain profile. 893 953 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Cca06g01664 1129 MobiDBLite consensus disorder prediction 533 567 - -
Cca06g01664 1129 ProSiteProfiles Post-SET domain profile. 1113 1129 IPR003616 -
Cca06g01664 1129 SUPERFAMILY SET domain 840 1100 IPR046341 -
Cca06g01664 1129 MobiDBLite consensus disorder prediction 1 22 - -
Cca06g01664 1129 Pfam SAD/SRA domain 680 828 IPR003105 -
Cca06g01664 1129 ProSiteProfiles SET domain profile. 956 1099 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01664 Cca-Chr6 31891249 31894638 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01664 526 1128 Su(var)3-9 homologs AT1G73100 39.194 3.07e-117 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Cca06g01664 SAD_SRA 1.7e-52 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01664 K11420 - gmx:100803378 1620.91