LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca06g01661	ATGTCAAAGAGAAAGGTTAGAGAGCCAAAGGAGGAGAACGTGACTCTGGGTCCAGCTGTTAGAGATGGTGAACATGTCTTTGGCGTTGCTCGCATCTTTGCATCCTTCAACGACACATTCATTCATGTCACTGATTTGTCTGGGAGGGAAACACTTGTCCGCATCACTGGTGGAATGAAGGTTAAAGCTGATAGAGATGAATCGTCTCCATATGCTGCTATGCTTGCAGCACAGGATGTTGCTGCCAGATGCAAGGAACTGGGCATAACTGCACTTCATATCAAGCTCCGTGCCACTGGTGGAAACAAGACAAAAACACCTGGTCCTGGTGCCCAATCAGCTCTTCGAGCCCTTGCTCGTTCAGGAATGAAAATTGGTCGTATAGAGGACGTGACTCCCATTCCTTCGGACAGCACTCGTAGAAAGAGTGGTAGGAGGGGTAGAAGGCTTTAA	453	0.4834	MSKRKVREPKEENVTLGPAVRDGEHVFGVARIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAARCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDSTRRKSGRRGRRL	150

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca06g01661	150	PANTHER	40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11	2	150	IPR001971	GO:0003735\|GO:0005840\|GO:0006412
	Cca06g01661	150	Pfam	Ribosomal protein S11	28	146	IPR001971	GO:0003735\|GO:0005840\|GO:0006412
	Cca06g01661	150	Gene3D	Ribosomal protein S11	1	150	IPR036967	GO:0003735\|GO:0005840\|GO:0006412
	Cca06g01661	150	SUPERFAMILY	Translational machinery components	23	148	-	-
	Cca06g01661	150	PIRSF	RPS11p_RPS11a_RPS14e_RPS11o	1	147	IPR001971	GO:0003735\|GO:0005840\|GO:0006412
	Cca06g01661	150	PANTHER	BNAA05G27530D PROTEIN	2	150	-	-
	Cca06g01661	150	MobiDBLite	consensus disorder prediction	130	150	-	-
	Cca06g01661	150	ProSitePatterns	Ribosomal protein S11 signature.	115	137	IPR018102	-
	Cca06g01661	150	Hamap	30S ribosomal protein S11 [rpsK].	3	147	IPR001971	GO:0003735\|GO:0005840\|GO:0006412

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca06g01661	Cca-Chr6	31871728	31879087	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca06g01661	1	139	Cytoplasmic Ribosomal Protein Gene Family	AT3G52580	91.367	4.47e-93	264

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca06g01661	K02955		K01000	gmx:100785807	266.929