Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01660 ATGGGCAAACAAGGACCTTGCTATCACTGTGGAGTTACAAGCACACCACTTTGGCGCAATGGACCACCTGAAAAACCAGTACTATGCAATGCATGTGGATCTCGATGGAGGACAAAGGGAACTCTTGCTAATTATACCCCTTTACATGCTCGAGCAGAAACTGATGTTTGTGAGGATCAAAGGGTTTCCAGGGTAAAGAATATATTGTTAAATAAGAAGAAAGAATTGCCTTTGCTCAAACGAAAGCGGAACCATGATAATGTAATATCTAGAGCACCTGATTACAACCAGGGATTCCAAAAGGTTGTAGATGAAGACACAAGCAATCGATCAAGTTCAGGATCAGCTATCTCTAACTCAGAGAGCTGTGTGCAAATTGGTCATGGTGGCACAGATGCTAGTGATATGACAGGTCCTGTTCAGTCAGTGGTCTGGGATGCCACGGTGCCTTCAAAAAAGAGGACATGTGTTGGTCGTCCAAAGCCTTCTTCTGTTGAGAAGCTAACAAAAGATTTATGCACTATTCTTCATGAACAACAATCTTATTTTTCTGCATCTTCTGAAGATGATCTTCTTTTTGAATGTGAAACACCGATGGTCTCTGTTGAGATAGGACATGGAAGCGTTCTCATTAGGCATCCTAGCTATATAGCTCCTGAAGAAGAGTCTGAGGCTAGCTCTCTTTCAGTTGATAATAAACAATGTCCAATGAGTGAGGCATATTCTTATTTTGGCGCCATTCTAATGCATAATGATTCTAGTCACATGAAGTCATCAACTGTGGAAGTTGAAAAGATCAAGAACTCTACCGTTAAAAGTGACAAGTCTCAACATGAAAGAGTACAAATCCTTGGCAATCATGAATCGCCACTGTGCTCAATAGATTTAAATGATGTTGTAAACTATGAAGAGTTTTTGAGAATCATGACAAATGAAGAGCAACAGCAATTACTGAAGTTACTTCCTGTGGTTGATACTGCTAAACATCCTGATAGCCTTAAATTCATGTTCAATAGCTCTCAATTCAAGGAGAACTTAACTTATTTTCAGCAGCTTCTTGCGGAAGGAGTCTTTGATATCTCTTTGTTGGGGGCAAAACCTGAAGACTGCAAGACTTTGAAAAGACTTGCATTATCCAATCTGTCAAAGTCAAAATGGGTAGAACACTATAATTTTCTCAAGAAATGTAAAAACAAAGTTGGAAAATCTACTGGTACAGCATCAACTAATGTTGTAAACAACAAGGCATCAACTAATGTTGTAAACATCAAGAGAACACGTGACAGCAGAAATCAAAACTTTCCAGAATTTAAGACAATAATGAGGAGCCCCAAAAGTGTGATCACAAAGGTTGGCTATGAGGGAAGAGAAGCTGTAGAGGATGGTGCTTGCTATAGTGCAAAAAGCCTTTTTGCTTTGCCTCCTGATGCCAATTCACTCATGCTCGATTCTTTAAACTTTGTTGATGAGAGTACTGATCAGGATCTGCTGCTAGAGGTGCCATCTAACACTTCGTTTCCACAGGCAGAGCTCTTGCACCCAACTTTAAGCCTTGGTGCTCAAGCCAGCACCAGTAGTAGTTCAGTCTACTCACATCTGGGTCACCATTAA 1611 0.4029 MGKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAETDVCEDQRVSRVKNILLNKKKELPLLKRKRNHDNVISRAPDYNQGFQKVVDEDTSNRSSSGSAISNSESCVQIGHGGTDASDMTGPVQSVVWDATVPSKKRTCVGRPKPSSVEKLTKDLCTILHEQQSYFSASSEDDLLFECETPMVSVEIGHGSVLIRHPSYIAPEEESEASSLSVDNKQCPMSEAYSYFGAILMHNDSSHMKSSTVEVEKIKNSTVKSDKSQHERVQILGNHESPLCSIDLNDVVNYEEFLRIMTNEEQQQLLKLLPVVDTAKHPDSLKFMFNSSQFKENLTYFQQLLAEGVFDISLLGAKPEDCKTLKRLALSNLSKSKWVEHYNFLKKCKNKVGKSTGTASTNVVNNKASTNVVNIKRTRDSRNQNFPEFKTIMRSPKSVITKVGYEGREAVEDGACYSAKSLFALPPDANSLMLDSLNFVDESTDQDLLLEVPSNTSFPQAELLHPTLSLGAQASTSSSSVYSHLGHH 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01660 536 Pfam Asx homology domain 272 359 IPR028020 -
Cca06g01660 536 PANTHER GATA TRANSCRIPTION FACTOR-LIKE PROTEIN 1 535 - -
Cca06g01660 536 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Cca06g01660 536 SMART GATA_3 1 55 IPR000679 GO:0006355|GO:0043565
Cca06g01660 536 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
Cca06g01660 536 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 287 399 IPR044867 -
Cca06g01660 536 CDD ZnF_GATA 6 53 IPR000679 GO:0006355|GO:0043565
Cca06g01660 536 Gene3D - 282 384 IPR038108 -
Cca06g01660 536 Gene3D - 3 86 IPR013088 GO:0006355|GO:0008270
Cca06g01660 536 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Cca06g01660 536 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 46 - -
Cca06g01660 536 PANTHER OSJNBB0038F03.10 PROTEIN 1 535 IPR044589 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01660 Cca-Chr6 31863316 31869944 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01660 1 513 C2C2-Gata Transcription Factor Family AT4G17570 52.975 2.61e-156 454
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Cca06g01660 ASXH 6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01660 - - gmx:100798504 852.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01660 06 31863316 31869944 Cca11g01549 11 38728170 38734529 PCT