Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01646 ATGAATCCATGGAACCTCGCAACTTCCCATTTGCTCTCTCAACAATTTGCTTATCCTTCTCATTTCCTTGTACAAGAGATTCCTAACATGGAAAATTCCACCAGGGTTGTGACCAATGATCCTAGAGGTTCACAGATGACAATCTTTTATGGTGGTCAAGTTATTGTCGTTGATGATGTTCAAGCTGACAAAGCCAAAGACATCTTGTCTTTTGCCAGCACAGGAATGTCTCAAAATCAGAACGAGTATGCTTATGCATTCCCTGCTACAACTTCTGCTAGTTCCACTACTCGACCATTTCCTTTTCTTATGAATGTCATACCTACCACTGCCAAAATTTCGGTGCAGGAGCACCCTCAAGCACCATCCAAACCTGTTGTTTGTGATCTGCCACTGGCTAGGAAGGCTTCGCTTCATCGGTTCTTGGAGAAAAGAAAGTATAGAATTGCTGCCAGAGCACCATATCAAACAAGCAAGTCCATGCCATGGCTCACCTTGGCACCTAACTCACAAGACGAATCTGATTCTGAGAGCAACTCCAGCTTTTTGTTATTTTAA 558 0.4301 MNPWNLATSHLLSQQFAYPSHFLVQEIPNMENSTRVVTNDPRGSQMTIFYGGQVIVVDDVQADKAKDILSFASTGMSQNQNEYAYAFPATTSASSTTRPFPFLMNVIPTTAKISVQEHPQAPSKPVVCDLPLARKASLHRFLEKRKYRIAARAPYQTSKSMPWLTLAPNSQDESDSESNSSFLLF 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01646 185 Pfam tify domain 41 73 IPR010399 -
Cca06g01646 185 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 5 167 IPR040390 -
Cca06g01646 185 SMART tify_2 39 74 IPR010399 -
Cca06g01646 185 Pfam Jas motif 131 156 IPR018467 -
Cca06g01646 185 MobiDBLite consensus disorder prediction 166 185 - -
Cca06g01646 185 PANTHER PROTEIN TIFY 10A 5 167 - -
Cca06g01646 185 ProSiteProfiles Tify domain profile. 39 74 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01646 Cca-Chr6 31679572 31682936 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01646 25 167 Tify Gene Family AT1G19180 35.220 5.64e-24 93.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Cca06g01646 tify 4.8e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01646 K13464 - gmx:100800709 243.047