Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01639 ATGAAGTGTTTCTTCTTCAGAAAGAAATCAGAATCCGACCCAGAATTACCGAAAGGGAGGAAGAAGAAAAACCAGGTGGTGAATGGAGCAACCAAGTCCCCCAGCTCGGTACCATCGCCAAGGAGCATAAAAGAATTGTACAAAGAGAAAGAACACAACTTTAGAATTTTCACTTTGCAAGAGCTTGTGGATGCTACACATGGTTTCAATAGGATGCTGAAGATTGGAGAAGGGGGTTTTGGGATAGTATATAGGGGAAAAATTAGACTTGAAGATGGAGGTGATCCTATTGTGGTCGCAATAAAAAGACTTAACACGCGTGGCTTACAGGGGCATAAAGAATGGCTTGCGGAAGTTCAATTTCTCAGCGTTGTTAACCACCCGAATTTGGTTAAGCTTCTGGGATACTGCTCTGTCGACAGTGAAAGAGGAATCCAACGGTTGTTGGTGTATGAATTCATGCCAAACAGGAGCCTGGAGGATCATCTTTTCAGTCTTTCTTTACCTCATTTGCCTTGGAATACAAGATTGCAGATCATGCTCGGTGCTGCTCAAGGATTACATTATCTACATAACGGATTAGAGGTTCAGGTGATCTACCGAGATTTCAAATCTTCAAATGTGCTATTGGACAAGAAATTCCATCCCAAGCTCTCAGATTTCGGTCTTGCTAGGGAGGGCCCAACAGGTGATCAGACTCATGTATCTACTGCGGTAGTGGGAACACAGGGATATGCTGCACCAGAGTATGTTCAAACAGGTCACCTTAAAGCTCAGAGTGACATATGGAGTTTTGGTGTGGTACTTTATGAGATCCTTACAGGGAGGCGCGTATTGAATAGAAACCATCCAACAGGGGAACAAAAGCTTATAGAGTGGGTTAAGAATTACCCTGCCAACAGTAGCAGATTCAGCACCATCGTTGACCCACGTCTCAAGAACCAGTATTCTCTTGGTGCAGCAAGAAAAATAGCCAAGTTGGCAGATAGCTGCTTGAAGAAGAATCCTGAAGATAGACCATCCATGAGTCAGATAGTGGAAAGCTTGAAGCAAGCATTGCAGGATTCAGAAACCAAAAACACTTCGCACAATATGACTTCTAAATCCACCTGA 1113 0.4349 MKCFFFRKKSESDPELPKGRKKKNQVVNGATKSPSSVPSPRSIKELYKEKEHNFRIFTLQELVDATHGFNRMLKIGEGGFGIVYRGKIRLEDGGDPIVVAIKRLNTRGLQGHKEWLAEVQFLSVVNHPNLVKLLGYCSVDSERGIQRLLVYEFMPNRSLEDHLFSLSLPHLPWNTRLQIMLGAAQGLHYLHNGLEVQVIYRDFKSSNVLLDKKFHPKLSDFGLAREGPTGDQTHVSTAVVGTQGYAAPEYVQTGHLKAQSDIWSFGVVLYEILTGRRVLNRNHPTGEQKLIEWVKNYPANSSRFSTIVDPRLKNQYSLGAARKIAKLADSCLKKNPEDRPSMSQIVESLKQALQDSETKNTSHNMTSKST 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01639 370 MobiDBLite consensus disorder prediction 8 41 - -
Cca06g01639 370 MobiDBLite consensus disorder prediction 335 370 - -
Cca06g01639 370 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
Cca06g01639 370 ProSiteProfiles Protein kinase domain profile. 69 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g01639 370 MobiDBLite consensus disorder prediction 26 40 - -
Cca06g01639 370 SUPERFAMILY Protein kinase-like (PK-like) 51 349 IPR011009 -
Cca06g01639 370 Gene3D Transferase(Phosphotransferase) domain 1 154 369 - -
Cca06g01639 370 ProSitePatterns Protein kinases ATP-binding region signature. 75 102 IPR017441 GO:0005524
Cca06g01639 370 Gene3D Phosphorylase Kinase; domain 1 48 153 - -
Cca06g01639 370 CDD STKc_IRAK 75 351 - -
Cca06g01639 370 MobiDBLite consensus disorder prediction 8 22 - -
Cca06g01639 370 PANTHER OS01G0588500 PROTEIN-RELATED 9 359 - -
Cca06g01639 370 MobiDBLite consensus disorder prediction 341 370 - -
Cca06g01639 370 Pfam Protein kinase domain 71 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g01639 370 PANTHER RECEPTOR-LIKE KINASE PLANT 9 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01639 Cca-Chr6 31635265 31638566 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01639 3 349 Glycoside Hydrolase AT3G07070 43.417 9.96e-97 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Cca06g01639 Pkinase 7.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01639 - K00924 gmx:100782248 654.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01639 06 31635265 31638566 Cca06g01639 06 31635265 31638566 ECH
Cca06g01639 06 31635265 31638566 Cca11g01522 11 38336333 38338891 PCT