Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01637 ATGGGAGAAGAAGAACGGAGTGCGGCGGTTCTGCCATGGATGCGCGACCCCGTCGACGTGACTCTCTGTAAACAACTCTCCCTCCGTAAGGTTCCTTTTCTCAACCCTAGTTTAAAATCCGCACTAGAAAGCATCGGAATCTCCGAGCTGTTTCCCGTTCAAGTCGCGGTTTGGCAAGAAACCGTTGGACCCGGTAACTTGGACCGTGACCTTTGCATAAACTCGCCTACCGGCAGCGGCAAAACCTTGGCCTACGCTCTCCCCATCGTGCACAAGTTGTCCACGCGCACCCTCACGCGCCTCCGTGCGCTCGTGGTTGTTCCTAGCCGTGACCTAGCTTTGCAGGTTAAACAAGTTTTCGACACTCTCGCGTCGCCGCTAGGCCTCCGTGTTGGCTTGGCCGCCGGACAGTCTTCGTTGAAGGATGAAATTTTCAGTCTTGTTCAAATGCCTGGATACGAGGATGATCCATATGTTTCGCATGGGTTTCGATGCAAGGTGGACATATTGGTGGCAACTCCGGGAAGGCTTGTAGATCACATTGGAAACAAGAATACTACAGGCTTTACACTTGAGCATCTTTATTATCTTGTGGTTGATGAAACAGATCGGTTGCTTAGGGAGGACTACCAGTCCTGGCTGCCTGCTGTGCTTGAATCAACCCAATCTAATGATGATGTTTTTCAATCGGGAGTGTTGAGAACCGTAAGAAGATGTGGTGGAGTTGAAAGGGGCTTCAAGCCTAACCCTaggctgacaaagatggttttatctgcaacattaactcaggacccaggcaagcttgtacagcttaatttgcatcatcctttattcctgagtgctGGGAAAATGCGTTATCGACTCCCAGAAAATTTGGAATCATACAAACTGATCTGTGAAAGAAAGGTCAAACCATTGTATTTGGTTGCCCTTTTGAAATCCCTGGGAGAAGAAAAATGTATAGTTTTTACAAAATCTGTGGACTCAACACGTCGTCTCTGCAAATTGTTGAATTGTTTTGAAGACTTGCAAATTGATATCAAGGAGTATTCTGGCCTTCAACATCAACGTGTAAGAAGCAAGACACTGAATGAATTTCGGAAAGGGGAGTTTCAAGTGCTTGTATCTTCTGATGCAATGACTCGTGGAATGGATGTTGAAGGGGTAAGAAATGTCATTAATTATGACATGCCTAAATACATAAAGACTTATGTTCATCGGGCTGGTAGGACCGCAAGAGCTGGCCATTCTGGGCGTTGCTTCACATTGATGTCAAAGGATGAGATTGGGCGATTTAAGAAGATGATGAGAAAAGCTGAGGCTAGTGCTTTTCAGGAGCATTCTGTTCCATCCAGTTTGGTTGAGGCACTTACTTCTACCTACCAATCAGCACTAACAAAAATGAAGGAGATTATTTTGGAGACCCGGAAGAAACCCAAGAAATTAGAGTCTTGA 1455 0.433 MGEEERSAAVLPWMRDPVDVTLCKQLSLRKVPFLNPSLKSALESIGISELFPVQVAVWQETVGPGNLDRDLCINSPTGSGKTLAYALPIVHKLSTRTLTRLRALVVVPSRDLALQVKQVFDTLASPLGLRVGLAAGQSSLKDEIFSLVQMPGYEDDPYVSHGFRCKVDILVATPGRLVDHIGNKNTTGFTLEHLYYLVVDETDRLLREDYQSWLPAVLESTQSNDDVFQSGVLRTVRRCGGVERGFKPNPRLTKMVLSATLTQDPGKLVQLNLHHPLFLSAGKMRYRLPENLESYKLICERKVKPLYLVALLKSLGEEKCIVFTKSVDSTRRLCKLLNCFEDLQIDIKEYSGLQHQRVRSKTLNEFRKGEFQVLVSSDAMTRGMDVEGVRNVINYDMPKYIKTYVHRAGRTARAGHSGRCFTLMSKDEIGRFKKMMRKAEASAFQEHSVPSSLVEALTSTYQSALTKMKEIILETRKKPKKLES 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01637 484 Gene3D - 18 282 IPR027417 -
Cca06g01637 484 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 62 279 IPR014001 -
Cca06g01637 484 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 101 436 IPR027417 -
Cca06g01637 484 SMART helicmild6 331 415 IPR001650 -
Cca06g01637 484 CDD DEADc_DDX51 38 280 - -
Cca06g01637 484 Pfam DEAD/DEAH box helicase 52 267 IPR011545 GO:0003676|GO:0005524
Cca06g01637 484 CDD SF2_C_DEAD 292 423 - -
Cca06g01637 484 Pfam Helicase conserved C-terminal domain 304 415 IPR001650 -
Cca06g01637 484 PANTHER RNA HELICASE 28 465 - -
Cca06g01637 484 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 307 457 IPR001650 -
Cca06g01637 484 SMART ultradead3 46 295 IPR014001 -
Cca06g01637 484 PANTHER ATP-DEPENDENT RNA HELICASE DDX51 28 465 - -
Cca06g01637 484 Gene3D - 290 484 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01637 Cca-Chr6 31618047 31622485 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01637 56 428 Eukaryotic Initiation Factors Gene Family AT3G13920 23.861 1.77e-26 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01637 K14807 - gmx:100789424 645.195