Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01634 ATGCTGGAGGATCAGGTGGCGTACCTCTTGCAGAGGTACCTTGGCAATTATGTGAGAGGTCTCAGCAAAGAAGCTCTCAAAATCAGTGTCTGGAAAGGTGATGTAGAGCTGAAGAATATGCAGCTGAAGCCTGAGGCTTTAAATGCATTAAAACTTCCGGTGAAGGTTAAGGCAGGTTTTCTTGGATCAGTGAAACTTCAGGTTCCATGGAGTAGGCTTGGCCAAGATCCAGTCTTAGTATATTTGGATCGCATTTTCTTACTAGCTGAACCTGCAACTCAAGTTGAGAGATGTAGTGAGGATGCTGTCCAAGAAGCTAAAAAGAGCCGAATACAGGAGATGGAATTGAAACTATGGGAGAAGGCACAACAGTTAAAGTCAGAAATGAATAAATCATGGTTGGGATCCCTCATCAGCACCATCATTGGAAATTTGAAGCTTTCAATTTCCAATATTCACATCAGATATGAGGATGGTGAGAGCAATCCAGGGCACCCATTTGCAGCTGGAGTTATGTTGGACAAACTCTCAGCTGTGACAGTTGATGATACTGGGAAAGAGACATTTATTACTGGAGGGGCACTAGATCGCATTCAAAAGTCTGTTGAACTTGATCGACTTGCAGTTTATTTAGATTCAGATATTATACCATGGCATGTTAACAAAGCATGGGAAGATTTGCTTCCTTCAGAGTGGTTTCAGATATTTAAATTTGGGACTAAAGATGGGAAGCCAGCTGATAATTTGTTAAGAAAGCACTCATATATTTTGCAACCAGTGACTGGGAAAGCAAAGTACTCTAAGCTGCTGTCAAGTGAAGTTACTGATAGCAAACAACCTTTACAGAATGCTGTGGTGAATTTGGATGATGTTACAATTAGCTTATCTAAGGATGGATACAGTGATATCATGAAATTAGCAGACAACTTTGCTGCATTTAATCAACGTCTGAAGTATGCTCATTATCGTCCACTGGTTCCTGTAAAAACTGATTCCAGGTCTTGGTGGAAGTATGCTTACAGAGCTGTTTCTGACCAGATAAAGAAGGCAAGGACGGACATGTGCCGGCAAAATTCTCCGGTGCACCATTCCGGTGAAGAAGAAATTGGCGCCGACGAGAGCCTTTTGATTTATTGCAAGCCTGTTGAACTGTACAATATTCTCTACCGCCGTGCTCTTCAAAATCCTTCTTTTCTTAGGCGAAGTTTGCGTTATAAAATTAGGGCAAGGCGTAAAAAGAGGCTGAGAGCAGGAATTGTGATTTTCAATTATAGGGACCGTTATAACATGCTTCGAAAGACTGAAGTGACCGAAGAATTTTCTTGTCCGTTTTGCTTGATGCAGTGTGGCAGCTTTAAGGGTTTGCGATTTCATCTCTGTTCATCTCATGATCTTTTCAACTTTGAGTTCTGGGTTACTGATGATTACCAAGCAGTTAATGTCTCTGTAAAAGTTGATATATTGAGATCAGAGGATGTTGTTGATGGAGTAATTGCACAATCACAAACCTTCTCCTTCTGTTCAAGGCCTCGAAAACGTCAAAGAATGGACTCTGTTCAAAATGAAAAGCACATCAATGTAAAATTCCTGGAGCTGGACTCACCAGATGGCACACAGAATGGATTTCTACAAAAAGATGATGATATCCTGTCCTGCAAAGGGGAGAATGTTTCTAGAACATCTCGTAATGAGAAGATTTTGCCTAATGGAAGAAATGATGGTGGAAAGTTTGGTACTGATCATCCTGGAACAATGGATGACCTGGATCATGTTGAATCCAGTTTCAACATTCCAGGTGTTTCAATTGCCATGCCCCAATCTTCTGTGGACCCTGAATGTAGTAAATCAGTTTGTAAAAGTGATCCTGCTCTGCCTGCTAAAACAAGGAAGCTAAGTATGGATCGATCAGACTCAAGAAACCGAATGCTTCTTCAGAAGAGACAGTTCTTTCACTCACACAGAGTCCAGCCTATGGCACTAGAACAAGTGTTATCAGACCGTGATAGTGAAGATGAAGTTGATGACGACATTGCTGATCTTGAAGATAGAAGGATGCTTGATGATTTTGTGGATGTTTCCAAAGATGAAAAACAACTCATGCATCTCTGGAACTCTTTTATGAGGAAGCAAAGGGTGCTGGCAGATGGTCATGTTCCGTGGGCCTGCGAGGCATTTTCCAAGCTTCATGGAAAAGACCTGATTTCATGTCCAGCTTTATTTTGGTGTTGGAGGTTATTCATGATCAAACTTTGGAATCATGGTCTTCTTGATGCATGCACAATGAATAACTGTAGCATGATAGTAGATAGTTACAGAAATGACGGATTGGATACTGGCAAAAATTGA 2346 0.4113 MLEDQVAYLLQRYLGNYVRGLSKEALKISVWKGDVELKNMQLKPEALNALKLPVKVKAGFLGSVKLQVPWSRLGQDPVLVYLDRIFLLAEPATQVERCSEDAVQEAKKSRIQEMELKLWEKAQQLKSEMNKSWLGSLISTIIGNLKLSISNIHIRYEDGESNPGHPFAAGVMLDKLSAVTVDDTGKETFITGGALDRIQKSVELDRLAVYLDSDIIPWHVNKAWEDLLPSEWFQIFKFGTKDGKPADNLLRKHSYILQPVTGKAKYSKLLSSEVTDSKQPLQNAVVNLDDVTISLSKDGYSDIMKLADNFAAFNQRLKYAHYRPLVPVKTDSRSWWKYAYRAVSDQIKKARTDMCRQNSPVHHSGEEEIGADESLLIYCKPVELYNILYRRALQNPSFLRRSLRYKIRARRKKRLRAGIVIFNYRDRYNMLRKTEVTEEFSCPFCLMQCGSFKGLRFHLCSSHDLFNFEFWVTDDYQAVNVSVKVDILRSEDVVDGVIAQSQTFSFCSRPRKRQRMDSVQNEKHINVKFLELDSPDGTQNGFLQKDDDILSCKGENVSRTSRNEKILPNGRNDGGKFGTDHPGTMDDLDHVESSFNIPGVSIAMPQSSVDPECSKSVCKSDPALPAKTRKLSMDRSDSRNRMLLQKRQFFHSHRVQPMALEQVLSDRDSEDEVDDDIADLEDRRMLDDFVDVSKDEKQLMHLWNSFMRKQRVLADGHVPWACEAFSKLHGKDLISCPALFWCWRLFMIKLWNHGLLDACTMNNCSMIVDSYRNDGLDTGKN 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01634 781 PANTHER POLYCOMB GROUP PROTEIN EMBRYONIC FLOWER 2-RELATED 354 415 - -
Cca06g01634 781 PANTHER POLYCOMB GROUP PROTEIN EMBRYONIC FLOWER 2-RELATED 414 779 - -
Cca06g01634 781 Pfam VEFS-Box of polycomb protein 631 766 IPR019135 -
Cca06g01634 781 Pfam Vacuolar sorting-associated protein 13, N-terminal 133 352 IPR031646 -
Cca06g01634 781 PANTHER POLYCOMB GROUP PROTEIN 354 415 - -
Cca06g01634 781 PANTHER POLYCOMB GROUP PROTEIN 414 779 - -
Cca06g01634 781 Pfam N-terminal region of Chorein or VPS13 2 109 IPR026854 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01634 Cca-Chr6 31543022 31559320 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01634 414 769 C2H2 Transcription Factor Family AT5G51230 55.833 1.13e-112 354
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01634 K19525 - gmx:100807112 774.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01634 06 31543022 31559320 Cca06g01634 06 31543022 31559320 ECH