Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01629 ATGTTCGAACAAAGTGGCTTGGATTCCGATTTGGCCCTTTTGGACTCCATTCGACGGCACCTACTGGGCGATTCCGAGGAACACAAATTCGGAGCCCCGAACGTTAATTCGGGTAACATTCCACTTTACTCTCGGAGCTCCAGTTTCAGCAGGTTGTACCCGTGTTTGAGCAAGGATTGGGGCGAACTTCCTCTCAAAGAAGATGATTCAGAGGACATGCTACTTTACGGCGTGCTTCGCGACGCCATCAACGTCGGCTGGGTCCCATCTCTCGATGCGGCTTCGCCGGTCACCGTCAAATCGGAGCCCGATCTGTTTCCGCCTCCGGAGCCGGGCATTgccgctgcggcggtgaagaaggctgcaccggcggcggcgaaggggaagcactaccgcggcgtgcggcagcggccgtgggggAAGTTCGCGGCGGAGATCCGTGACCCGGCTAAGAATGGGGCGCGGGTTTGGCTCGGAACCTTCGAAACGGCTGAGGACGCGGCGCTGGCTTACGACCGAGCCGCCTACCGAATGCGCGGCTCCCGGGCGTTGTTGAATTTCCCGCTCCGTGTCAACTCGGGCGAGCCCGAACCGGTTCGGATCACGTCCAAGCGGTCCTCGCCGGAGCCTTCGTCTTCGTCGGAGAGTGGGTCGCCGGGGAAGCGGCGGAGGAAggtggcggcgggtgtgggtgtggcgggtgatggtgggTTGATAACTGGGCCTGGGCAAGTGGGAAGTCAAGTGGGTCAGTGCACACGTGCGGAGCAGTTGTTGGTTAGTTAA 786 0.5 MFEQSGLDSDLALLDSIRRHLLGDSEEHKFGAPNVNSGNIPLYSRSSSFSRLYPCLSKDWGELPLKEDDSEDMLLYGVLRDAINVGWVPSLDAASPVTVKSEPDLFPPPEPGIAAAAVKKAAPAAAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLRVNSGEPEPVRITSKRSSPEPSSSSESGSPGKRRRKVAAGVGVAGDGGLITGPGQVGSQVGQCTRAEQLLVS 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01629 261 CDD AP2 130 188 IPR001471 GO:0003700|GO:0006355
Cca06g01629 261 Pfam AP2 domain 130 180 IPR001471 GO:0003700|GO:0006355
Cca06g01629 261 PRINTS Ethylene responsive element binding protein signature 131 142 IPR001471 GO:0003700|GO:0006355
Cca06g01629 261 PRINTS Ethylene responsive element binding protein signature 154 170 IPR001471 GO:0003700|GO:0006355
Cca06g01629 261 SUPERFAMILY DNA-binding domain 130 190 IPR016177 GO:0003677
Cca06g01629 261 ProSiteProfiles AP2/ERF domain profile. 130 188 IPR001471 GO:0003700|GO:0006355
Cca06g01629 261 PANTHER DNA-BINDING DOMAIN 26 231 IPR044808 GO:0003700|GO:0009873
Cca06g01629 261 Gene3D AP2/ERF domain 129 191 IPR036955 GO:0003700|GO:0006355
Cca06g01629 261 MobiDBLite consensus disorder prediction 194 252 - -
Cca06g01629 261 SMART rav1_2 130 194 IPR001471 GO:0003700|GO:0006355
Cca06g01629 261 PANTHER BNAANNG21280D PROTEIN 26 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01629 Cca-Chr6 31508988 31510503 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01629 9 260 AP2-EREBP Transcription Factor Family AT4G17500 58.736 4.98e-87 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca06g01629 AP2 1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01629 K09286 - gmx:100819649 329.331