Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01620 ATGGCTCTTTATCTATTCTGTTGTCTTTTTGCTATTACTTTGATTTTCATGCAAACTCTCGCGGACACTTCATGCACAGATTGTTTCATTCATTCTCGGGCAGCATATTATCCGAATTCTGAAGAACACGGGACAGATGTAGGTGCATGTGGTTTTGGTTCCTTTGGTGCTACAGTCAATGGCGGGGATGTATCAGCTGCATCTTCTCTTTATCGAAATGGTGTTGGCTGTGGAGCCTGTTACCAGGTGAGGTGTACCAACAGTGCCTATTGCTCAGAAAATGGTGTAACTGCAGTCATAACTGACCAAGGTTCAAGTGATAACACTGATTTCATTCTTAGCAAACATGCCTTTAGCCGGATGGCTCAAACCACTGATGCAGCTGCTTCTCTATTAGCCCTTGGCGTGGTTGATATTGAATATAGACGTGTTGCATGCAGCTACCCATCTAAGAACATAACATTCAAGATAGATGAGAGCAGCAACAACCCTTATTACTTGGCTTTTGTCATTTGGTATCAACAAGGAAAGAGAGACATAACTGCTGTGCAGCTCTGTGAGACTAAAAACTTAGTGTGCAAGTTACTGGATCGGAGCCATGGAGCGGTGTGGACTAGTGCCTCTCCACCAAGTGGACCTTTGTCTATAAGGATGTTGTTTAGTGATGAAGAAGAGGGAGAAGAAACATGGGTTGTTCCTGTTAATAACATACCCGAAGATTGGAAGGGAGGAGAAACATACGATTCAGGAGTACAAGTGAATCAATAG 768 0.4323 MALYLFCCLFAITLIFMQTLADTSCTDCFIHSRAAYYPNSEEHGTDVGACGFGSFGATVNGGDVSAASSLYRNGVGCGACYQVRCTNSAYCSENGVTAVITDQGSSDNTDFILSKHAFSRMAQTTDAAASLLALGVVDIEYRRVACSYPSKNITFKIDESSNNPYYLAFVIWYQQGKRDITAVQLCETKNLVCKLLDRSHGAVWTSASPPSGPLSIRMLFSDEEEGEETWVVPVNNIPEDWKGGETYDSGVQVNQ 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01620 255 PANTHER EXPANSIN-B3 7 254 - -
Cca06g01620 255 SUPERFAMILY PHL pollen allergen 151 249 IPR036749 -
Cca06g01620 255 Pfam Expansin C-terminal domain 153 232 IPR007117 -
Cca06g01620 255 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576
Cca06g01620 255 PRINTS Expansin/Lol pI family signature 134 150 IPR007118 GO:0005576
Cca06g01620 255 PRINTS Expansin/Lol pI family signature 235 249 IPR007118 GO:0005576
Cca06g01620 255 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 165 249 IPR007117 -
Cca06g01620 255 Gene3D - 149 253 IPR036749 -
Cca06g01620 255 Gene3D - 17 147 IPR036908 -
Cca06g01620 255 PANTHER EXPANSIN-LIKE B1 7 254 - -
Cca06g01620 255 SUPERFAMILY Barwin-like endoglucanases 18 150 IPR036908 -
Cca06g01620 255 Pfam Lytic transglycolase 67 141 IPR009009 -
Cca06g01620 255 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 151 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01620 Cca-Chr6 31340761 31342575 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01620 4 251 Expansin Gene Family AT4G17030 40.161 5.60e-59 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01620 - - ccaj:109799868 529.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01620 06 31340761 31342575 Cca11g01510 11 38115514 38117878 PCT