Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01612 ATGCTTAAGCAACTCTTCAAGTTTGGGTTAGCAAGTAGCAGCCATTCGTTCAATTACCAAAATGCCCTTATTCTACCCATGACAATTGACAAGAGAAAGAAAACAACTTTGCCCAGAGTAGTTGGTGGGGCATTTTCTTTTAAACCAAGAAGGAATTCGGTGCTGATAGGCAATATTGATCTGTTACATCAGGTTCTTCTGCTTGAAGGAGATAGTAGTTCTGCTGCTGAGATAAAAGAACAACTTGAGGCCATGGACTATAATGTTTCTACTTTCTTCGATGAGAATGAAGCCTTGTCAGCAATCTCGAGTAGTCCTGAAGGCTTCCATGTTGCCATAGTGGAGGTGAGTTCAAGCAGTAGCCTTGGGGGTTTCAAATTTCTTGAAAATGCAAAGGACTTGCCTACCATTATGACTTCAAAGGACCAGTGCCTGAATACCATGATGAAGTGCATTGCGCTTGGTGCAGTTGAGTTCCTCAGTAAACCACTTTCTGAGGACAAGCTCAAAAATATTTGGCAGCATGTTGTTCACAAGGCATTTAATGCTGGGGCAAATGTCCTGTCTGAATCACTAAAACCTGTCAAAGAATCTGTAGAATCCATGCTGCAGCACCAAGCAGACAGTGAACAAGATAAAAGCATGAAACTAATTGATTTAGAGAATGTGTCCAGGTTTAGTGATAATGACCATGAGCAGTCTGCTGTATGCGATAAATATCCGGCTCCTTCGACCCCACAATTAAAACATGGGACAAGGTTACTGGATGATGGAGATTGCCATGAGCAGACTAATTGCTCAACAGAAAAAGAAAGTGGAGAGCATGATGGTGAATGTAAATCTGTCGAAACTTCATGTGACAATTTGAATGCTGAAAGTTCTCCTCAACCAAGGGAACCTGATAAGACTCTGATTAAGGAGGAAGAGGATTTTGCCAATGGTTCCAAGAGTGAAAACACTGTTCCACTGAATCCGCATAATAAAGAGCTTCTCAACAATGCCGATCACAATACATCTCCAAATAAGACGGGTGTACTTAATGATTCGTGTGAGATTAAAGCTAATCGGAAGAAGATGAAAGTAGACTGGACGCCTGAGCTGCATAAAAAATTTGTGAAGGCTGTTGAACAACTAGGTATTGATCAAGCCATTCCTTCTAGAATATTGGAGATCATGAAAGTGGACGGCTTGACAAGGCACAATGTGGCGAGCCATCTCCAGAAATATAGAATACACAAGCGACAAAGTGCACCTGGAGATGATGATCGAAAATGGCCTAATCAAAGAGATGCTATGCAAAGGAGCTATTATATGCAAAGACCAATAATGGCTTACCCTCCATATCATACAAATCACACCCTTTCTCCAGCTCCTATATATCCTATGTGGGGACAACCTGGCAGTCAAACAGCTGGTGTACAAATTTGGGGCCCTCCTAGTTATCCCTTGTGGCATCCTACAGAAAGTTGGCACTGGAAGCCTTATCCAGGGGTGCATGTGGATGCTTGGGGATGCCCAATGTTTCCACCTCCTCAAGCTCCTTGTTTTCCTTACAATCAAAATATACCTGGATTGCACAATCCTAAAGCTGTGGATTATAGATTTGGTATGCCACGAAGTTCCTTTGAGCATCATCCGGCAGAGGAGGTGGTAGACAAGGTTGTGAAGGAAGCAATGAGCAAGCCATGGCTACCATTGCCCTTAGGACTCAAACCTCCTTCCATGGATAGTGTGTTGGCTGAGCTCTCCAAACAAGGTTACAACTACAGTTGTAGATTTAGCTGGAAGTTGGGGCCATTTACTTTGCCTCGTGTCCCCCACCGCTACACCATCCACCACTCATGA 1845 0.432 MLKQLFKFGLASSSHSFNYQNALILPMTIDKRKKTTLPRVVGGAFSFKPRRNSVLIGNIDLLHQVLLLEGDSSSAAEIKEQLEAMDYNVSTFFDENEALSAISSSPEGFHVAIVEVSSSSSLGGFKFLENAKDLPTIMTSKDQCLNTMMKCIALGAVEFLSKPLSEDKLKNIWQHVVHKAFNAGANVLSESLKPVKESVESMLQHQADSEQDKSMKLIDLENVSRFSDNDHEQSAVCDKYPAPSTPQLKHGTRLLDDGDCHEQTNCSTEKESGEHDGECKSVETSCDNLNAESSPQPREPDKTLIKEEEDFANGSKSENTVPLNPHNKELLNNADHNTSPNKTGVLNDSCEIKANRKKMKVDWTPELHKKFVKAVEQLGIDQAIPSRILEIMKVDGLTRHNVASHLQKYRIHKRQSAPGDDDRKWPNQRDAMQRSYYMQRPIMAYPPYHTNHTLSPAPIYPMWGQPGSQTAGVQIWGPPSYPLWHPTESWHWKPYPGVHVDAWGCPMFPPPQAPCFPYNQNIPGLHNPKAVDYRFGMPRSSFEHHPAEEVVDKVVKEAMSKPWLPLPLGLKPPSMDSVLAELSKQGYNYSCRFSWKLGPFTLPRVPHRYTIHHS 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01612 614 MobiDBLite consensus disorder prediction 315 347 - -
Cca06g01612 614 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 355 414 IPR017930 -
Cca06g01612 614 SMART REC_2 63 173 IPR001789 GO:0000160
Cca06g01612 614 ProSiteProfiles Response regulatory domain profile. 64 177 IPR001789 GO:0000160
Cca06g01612 614 Gene3D - 62 189 - -
Cca06g01612 614 Gene3D - 354 415 - -
Cca06g01612 614 MobiDBLite consensus disorder prediction 231 259 - -
Cca06g01612 614 Pfam Response regulator receiver domain 65 171 IPR001789 GO:0000160
Cca06g01612 614 Pfam Myb-like DNA-binding domain 361 410 IPR001005 -
Cca06g01612 614 PANTHER TRANSCRIPTION ACTIVATOR GLK1 64 587 IPR044825 GO:0003700|GO:0045893
Cca06g01612 614 PANTHER TWO-COMPONENT RESPONSE REGULATOR-APRR2-LIKE PROTEIN 64 587 - -
Cca06g01612 614 SUPERFAMILY CheY-like 64 179 IPR011006 -
Cca06g01612 614 SUPERFAMILY Homeodomain-like 357 414 IPR009057 -
Cca06g01612 614 MobiDBLite consensus disorder prediction 310 347 - -
Cca06g01612 614 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 358 413 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01612 Cca-Chr6 31285444 31294775 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01612 64 588 Response Regulator Gene Family AT4G18020 48.829 1.19e-129 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Cca06g01612 Response_reg 2.2e-07 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01612 - - gmx:100784905 954.896
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01612 06 31285444 31294775 Cca11g01502 11 37961893 37968773 PCT