Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01593 ATGCCTTACGCTAGTAAAATTCATCGAGCAAATCGGAAAACTCGTATGGTGAAACAAGATTCCTCTAATTTGAACAAGAAATGGATGGTGCCTTATAGATACTATTCTGACAAGGGTCCCAATCCCGTTCCAAACCCTAATGCTGACCCGTCAAGTTGGGTCCTCTGCAATGAGGAACATTTGAAAGATATTGCATTGAAATATATCAAAATTATATATAAAAATACTGTGTCGAGGCTCGTCGCTATGGGGCACAATGAGGATGTTGCCGTGAAAGCTGTTCTGCATAATGGACATTGTTATGGTGCCAATGATTTGGCAACAAACGTGCTGCACAACACCTTGGCTTGTTTGGATAAGGTAGACTTGGACGCGAATGAGTTAAAGTCTGCTTTCTCTGATTTGAAGCAGCTCGAAGAGTACTCTCTGCAGAGCCTCGTGTCTTTGTTGCAAGAGGTGAGGTCCGATTTGAGTAAAGGTGATGCTATGTGGTGTCTCCTCATGAGCAAATTTCATGTGGTAAAGGCAAGCGGCATCCAAGTTCCTGCTGCAAACCAGCGTCCTCCTCCTTTAACTGAATTTGGGAATGAGGGAGGCTCGAGTTTTCCTTTGAACGGGTTATTTTGTGGCAATGAGATGACTATACAGTTACAGAGAGAGATTGAATTCCCAAAAAGACTTGATCTTACTCCTGGCATGAAGTCCTTGTTGAAAAGAAATGTTGCAATGTTTGCTGCTGGTTATAGGACTAAACTAAAACAGTTGAATTCCCAAAAGGATTTTACCTTTCCTGGCAATAGCACCGTTTCAAAGATGGATTCTTCATCTGTTTCTGAAACTGTAGTCCCTGGTGAGCAGGCTAGTGACTCTCAAGATCTGAATGACCAAGATGACATGAACACTGTGCTGAGTAAATTTCTTGAGCTAAAGATTGATATTGATGAGAATTTGGAGTTTGTAGCAGAAGATGAGAAGGAGGAGGTGATAGTCACTCTAATGCATCAGATAAAGGATCTTAAGAAACAGGTCAAGGAGCGAAAAGATTGGGCTCATGAGAAGGCAATCCAAGCGGCAAGAAAGCTAAGCAATGATCTGATTGAGCTGAAAATGTCCAAGATGGAAAGAGAGGAGAATAAAAAGTTGACTGAGAAAGAGACAGAGTTGGTGCTTGACGACCCAACTGTGACTAGACTCTCAGAATTGGAGGATGCCTTGAAAAAGGTTAGTGGTCAAGTGGACCAAGCAAATGCAGCTGTCAGAGAACTTGAGATGGAGAAAGCTGAAATCAAAGCTGAGTTAGAGGCTTGTAAATTAAGTGCATCAGAATCAGTCGCAAACTGCTTGCAAGTGGCAAAAAGGGAGAAAAAATGCTTAAAGAAGCTTCTGGCTTGGGAAAAACAGAAAGCTAAGATACAACAGGATATTTCATATGAAAAACAGAAGATATTGGAGATACAAGAAGAATTGGCTCAGACTAAACAGTGTGCTCAAGAAGCTGAGGTAATGAGGACAGAAGAGCTAAAGGCAAAGGAGGAAGCCTTAGCACTAATTGAAGAGGAACGCCGTTCAAAGGAAGCAGTTGAAGCTGATAATAAAAGAACCCTTAAGGCTTTACGCCTGAAGATAGAGATAGATTTCCAGCGTCGTAAGGATGATCTTCTAAGGCTTGAGCAGGAGATTTCACGTCTTAAAGCATCTGCACGGTCTGCTAATTTGCATCACCAGTCAAGCACTCTGCCTACAAGTGAGTCTAAGGATGCAGAGCCCCAGAGAGAGACAATTGCTAAGCTTCTGCAAGAATTAGATGACGTGAAGGATTTTTCAGGAGAAGTCAACGGTTATAGACAGTGCATTATATGTGGAAAAGATGAAGTTTCCGCAATTTTCTTGCCATGTGCGCACCAAGTTATGTGTGCTAGTTGCTGTAAAGAATATGGGAGAAAGGGCAAAGCCGTTTGTCCATGTTGCAGGGTTCCAATCGAACAGAAAATCCGTATATTTGGGGCAAGTTCGTAG 2016 0.4221 MPYASKIHRANRKTRMVKQDSSNLNKKWMVPYRYYSDKGPNPVPNPNADPSSWVLCNEEHLKDIALKYIKIIYKNTVSRLVAMGHNEDVAVKAVLHNGHCYGANDLATNVLHNTLACLDKVDLDANELKSAFSDLKQLEEYSLQSLVSLLQEVRSDLSKGDAMWCLLMSKFHVVKASGIQVPAANQRPPPLTEFGNEGGSSFPLNGLFCGNEMTIQLQREIEFPKRLDLTPGMKSLLKRNVAMFAAGYRTKLKQLNSQKDFTFPGNSTVSKMDSSSVSETVVPGEQASDSQDLNDQDDMNTVLSKFLELKIDIDENLEFVAEDEKEEVIVTLMHQIKDLKKQVKERKDWAHEKAIQAARKLSNDLIELKMSKMEREENKKLTEKETELVLDDPTVTRLSELEDALKKVSGQVDQANAAVRELEMEKAEIKAELEACKLSASESVANCLQVAKREKKCLKKLLAWEKQKAKIQQDISYEKQKILEIQEELAQTKQCAQEAEVMRTEELKAKEEALALIEEERRSKEAVEADNKRTLKALRLKIEIDFQRRKDDLLRLEQEISRLKASARSANLHHQSSTLPTSESKDAEPQRETIAKLLQELDDVKDFSGEVNGYRQCIICGKDEVSAIFLPCAHQVMCASCCKEYGRKGKAVCPCCRVPIEQKIRIFGASS 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01593 671 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 592 668 IPR013083 -
Cca06g01593 671 Pfam Zinc finger, C3HC4 type (RING finger) 615 662 - -
Cca06g01593 671 ProSiteProfiles Zinc finger RING-type profile. 617 657 IPR001841 -
Cca06g01593 671 SUPERFAMILY RING/U-box 598 664 - -
Cca06g01593 671 Coils Coil 322 342 - -
Cca06g01593 671 Pfam Family of unknown function (DUF6592) 69 176 IPR046527 -
Cca06g01593 671 MobiDBLite consensus disorder prediction 567 589 - -
Cca06g01593 671 MobiDBLite consensus disorder prediction 266 296 - -
Cca06g01593 671 MobiDBLite consensus disorder prediction 567 584 - -
Cca06g01593 671 Coils Coil 546 573 - -
Cca06g01593 671 Coils Coil 398 439 - -
Cca06g01593 671 PANTHER OS05G0141500 PROTEIN 6 670 IPR046934 -
Cca06g01593 671 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 6 670 - -
Cca06g01593 671 Coils Coil 507 537 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01593 Cca-Chr6 31095265 31098782 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01593 - - gmx:100789166 864.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01593 06 31095265 31098782 Cca11g01489 11 37707950 37714293 PCT