Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01592 ATGCCAGTTCCACTTGCCCCTTACCCGACACCCCTTCCACCAGCTCCATATGCGCCTCCACCAAATGGTGCACAGAGTCAACTTGTCTGTTCTTGGTGTAGAAATCTTCTGCTCTATCCAGTTGGAGCCACCTCTGTGTGCTGTGCTGTTTGCAATGCAGTCACAACAGTACCACCTCCTGGCATTGAAATGGCCCAGTTAGTTTGTGGAGGTTGTCACACTTTCCTCATGTACATCCGTGGAGCCACAAGTGTGCAATGTTCTTGTTGTCACACGATCAATCTAGCCTTGGAAGCAAATCAGGTGGCACATGTTAACTGTGGGAACTGTAAGATGCTACTCATGTACCAATATGGAGCAAGATCCGTTAAATGTGCAGTATGCAGTTTTGTAACATCAGTTGAGGTCTCAACAAGCACTACTGAGCAGAAATTCAACACCTAA 444 0.4707 MPVPLAPYPTPLPPAPYAPPPNGAQSQLVCSWCRNLLLYPVGATSVCCAVCNAVTTVPPPGIEMAQLVCGGCHTFLMYIRGATSVQCSCCHTINLALEANQVAHVNCGNCKMLLMYQYGARSVKCAVCSFVTSVEVSTSTTEQKFNT 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01592 147 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 27 57 IPR005735 -
Cca06g01592 147 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 104 133 IPR005735 -
Cca06g01592 147 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 66 95 IPR005735 -
Cca06g01592 147 PANTHER PROTEIN LSD1 1 144 IPR040319 -
Cca06g01592 147 PANTHER PROTEIN LOL1 1 144 - -
Cca06g01592 147 Pfam LSD1 zinc finger 107 131 IPR005735 -
Cca06g01592 147 Pfam LSD1 zinc finger 30 54 IPR005735 -
Cca06g01592 147 Pfam LSD1 zinc finger 69 93 IPR005735 -
Cca06g01592 147 SUPERFAMILY Multiheme cytochromes 30 128 IPR036280 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01592 Cca-Chr6 31089340 31091606 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Cca06g01592 zf-LSD1 8.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01592 - - gmx:100788563 238.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01592 06 31089340 31091606 Cca11g01486 11 37633395 37636049 PCT