Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01589 ATGGATTCTCGGGAACCGCCTCCGCCTCAGCCTCAGCCGCAACCGCCAAGCATGATGGTGGGCCCCGCCTCCTCCTACCCCTCGGTGATGGCCCCCGCCACCGCGCGATTCCCTTTCAACAGCAACCCTCCGCCCGACCCTTTCAACGACGCCACCACAGCCAACAACAACAACACCGCCACGTGCGAGGCCACGTTGAAACCGTGCGGGCTTCCCTCGGACTCCGCCAAGAAAAAGAGAGGCCGGCCCAGGAAATACTCCCCCGATGGCAACATTGCGCTGGGTCTGggcccaggcccaggcccaggcccaacccatgcTTCCTCTTCCTCCGCCGAACCTCCCGCTAAGAAGCACCGCGGCCGTCCCCCTGGCTCCGGAAAGAAGCAGATGGACGCGCTCGGAATCGGTGGAACTGGTTTCACTCCTCATGTTATCTTAGCCGAAGCTGGCGAGGATATTGCTGCAAAACTTATGGCCTTTTGTCACCAAGGACTGCGGACAGTTTGCATTCTCTCTGCTACTGGTGCAATCTGCAATGTTACCCTTAGGCAATCAGAAACTTCTGGGGGTGGTGTGTCCTATGAGGGTCAATTTGAGATTATATCACTTTCAGGTTCTACTCGACATTCTGAAAATAACAGTGGTCATAACAGAATGAGTAACTTGAGTGTGTCTCTAGCTGGTCCTGATGGAAGAGTATTGGGTGGTGAAGTTGTTGGAATGCTTACTGCAGCATCTCTAGTGCAGATCATTGTGGGGAGTTTTGTTGCGGATGGTAAGAAGTCTAGCTCAAGTAACCCAAAATCTGGACCGGCTGTGACACCATCATCCCAAATGGTAACTTTTGGTGGTCCTGTGACTCCAACCACTCCTACATCTCAAGGGAATTCAACTGAGTCCTCTGATGATAATGAGAATGGTCATTTTAGCAAGGGGTCAGGTGATCCAGGACTCTACAATAATAATGCTAGTCAGTCCGTTCATAACATTCCGATGTACCATCATCAACTATGGGCAGGACAAACTCAGCAGTGA 1038 0.5058 MDSREPPPPQPQPQPPSMMVGPASSYPSVMAPATARFPFNSNPPPDPFNDATTANNNNTATCEATLKPCGLPSDSAKKKRGRPRKYSPDGNIALGLGPGPGPGPTHASSSSAEPPAKKHRGRPPGSGKKQMDALGIGGTGFTPHVILAEAGEDIAAKLMAFCHQGLRTVCILSATGAICNVTLRQSETSGGGVSYEGQFEIISLSGSTRHSENNSGHNRMSNLSVSLAGPDGRVLGGEVVGMLTAASLVQIIVGSFVADGKKSSSSNPKSGPAVTPSSQMVTFGGPVTPTTPTSQGNSTESSDDNENGHFSKGSGDPGLYNNNASQSVHNIPMYHHQLWAGQTQQ 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01589 345 MobiDBLite consensus disorder prediction 1 20 - -
Cca06g01589 345 SUPERFAMILY AF0104/ALDC/Ptd012-like 140 257 - -
Cca06g01589 345 MobiDBLite consensus disorder prediction 1 133 - -
Cca06g01589 345 SMART AT_hook_2 77 89 IPR017956 GO:0003677
Cca06g01589 345 SMART AT_hook_2 117 129 IPR017956 GO:0003677
Cca06g01589 345 MobiDBLite consensus disorder prediction 46 64 - -
Cca06g01589 345 CDD DUF296 142 256 IPR005175 -
Cca06g01589 345 Gene3D - 143 270 - -
Cca06g01589 345 Pfam Plants and Prokaryotes Conserved (PCC) domain 143 257 IPR005175 -
Cca06g01589 345 MobiDBLite consensus disorder prediction 259 304 - -
Cca06g01589 345 ProSiteProfiles PPC domain profile profile. 138 278 IPR005175 -
Cca06g01589 345 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 47 311 IPR039605 GO:0003680
Cca06g01589 345 MobiDBLite consensus disorder prediction 259 326 - -
Cca06g01589 345 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 8 47 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01589 Cca-Chr6 31048913 31052243 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01589 60 345 AT-hook Motif Nuclear Localized (AHL) Family AT4G17950 46.012 1.19e-73 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01589 - - gmx:100788026 425.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01589 06 31048913 31052243 Cca11g01482 11 37550419 37554771 PCT