Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01587 ATGTCATGCATATCTTTGATTACACGTAGAACTAGTTTCCCTCCAGATGAAATTGTATATGGATTTAACAAGGACGGCACGCTCCGGGAACAGAGTGACGAACCCTCGCAACCTATTATTCGCTTCGTTCAAACTCTCcaccaaagaccagacttcaaccaccaatcacaagaagacgccaaccaaacacaaacaGACCAGTTCGAGATACTGTCGCTGGCGGGATCGTTCCTGCCGGCGCCGGCTCCGCCGGGGGCGACGAGCCTGAGCATTTACCTCGGCGGCGGGCAGGGGCAGGTGGTGGGAGGGAGTGTGGCCGGAGAGTTGACCGCGGCGGGACCGGTGATTGTGATCGCGGCGTCGTTCACCAACGTGGCTTATGAACGGTTACCGTTGgaggaagaagaagaagaagaagaaCATGCCTTTCTTCGCTTTCAGAATTCTGCATTTCACGATGAATTAATATTTCGTGGCATTCCCTTCTTTCATTGTAGAATAAAAGATGAAGCTAAATTGCTTTCGGTATCTTCACCAATTTACACCAACAGTTGCGTGCGTGTGATGGATAATTGGAAGGTAATGAGCTACTTGTCTAGTAACCGTTTGTAA 612 0.4363 MSCISLITRRTSFPPDEIVYGFNKDGTLREQSDEPSQPIIRFVQTLHQRPDFNHQSQEDANQTQTDQFEILSLAGSFLPAPAPPGATSLSIYLGGGQGQVVGGSVAGELTAAGPVIVIAASFTNVAYERLPLEEEEEEEEHAFLRFQNSAFHDELIFRGIPFFHCRIKDEAKLLSVSSPIYTNSCVRVMDNWKVMSYLSSNRL 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01587 203 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 63 140 IPR014476 GO:0003680
Cca06g01587 203 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 23 63 140 - -
Cca06g01587 203 Gene3D - 40 142 - -
Cca06g01587 203 ProSiteProfiles PPC domain profile profile. 1 147 IPR005175 -
Cca06g01587 203 SUPERFAMILY AF0104/ALDC/Ptd012-like 59 136 - -
Cca06g01587 203 Pfam Plants and Prokaryotes Conserved (PCC) domain 58 124 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01587 Cca-Chr6 31032557 31036985 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01587 56 136 AT-hook Motif Nuclear Localized (AHL) Family AT4G17800 80.247 1.89e-24 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01587 - - ccaj:109800526 184.111