Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01586 ATGGCTGCAGAGATTGGCCTTGTGTCCATGACCCAGATCCAAAAGCTAACACAACTCCAACACCGCAAAAACCAACAACCTCACCCAAACCCTAACCCCTCTTCCACTTGGATGTGGAACCCTAGGGAGGAAGAAGAAGATGACTCGTGGGAAGTTAGAGCCTTTGCAGAAGACACAAGGAACGTCATGGGCACCACATGGCCTCCAAGGTCCTACACCTGCACCTTCTGCCGAAGGGAGTTTCGCTCTGCCCAAGCCCTTGGCGGCCACATGAACGTCCACCGCCGCGACCGCGCTCGCCTCCACCAACCACCACCCTCCTCCTTCATCAATATCCCTCCCCAGGAACTTGTTGCAAATGCTGGATTCTCTGTGGTGTGTGGAGGAGATGGAGCATCATGTCCAGCCTGCGTGTGGCAGATAGGCTTATTATTGTGGGTTTGA 444 0.545 MAAEIGLVSMTQIQKLTQLQHRKNQQPHPNPNPSSTWMWNPREEEEDDSWEVRAFAEDTRNVMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARLHQPPPSSFINIPPQELVANAGFSVVCGGDGASCPACVWQIGLLLWV 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01586 147 MobiDBLite consensus disorder prediction 18 39 - -
Cca06g01586 147 ProSitePatterns Zinc finger C2H2 type domain signature. 74 94 IPR013087 -
Cca06g01586 147 MobiDBLite consensus disorder prediction 18 45 - -
Cca06g01586 147 Gene3D Classic Zinc Finger 60 107 - -
Cca06g01586 147 PANTHER OS07G0101800 PROTEIN 32 108 - -
Cca06g01586 147 ProSiteProfiles Zinc finger C2H2 type domain profile. 72 99 IPR013087 -
Cca06g01586 147 Pfam C2H2-type zinc finger 72 96 - -
Cca06g01586 147 PANTHER OS07G0101800 PROTEIN 32 108 - -
Cca06g01586 147 SMART c2h2final6 72 94 IPR013087 -
Cca06g01586 147 SUPERFAMILY beta-beta-alpha zinc fingers 69 99 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01586 Cca-Chr6 31016020 31016941 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01586 37 103 C2H2 Transcription Factor Family AT4G17810 72.973 5.69e-34 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca06g01586 zf-C2H2_6 2.4e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01586 - - gmx:100818142 199.519
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01586 06 31016020 31016941 Cca06g01586 06 31016020 31016941 ECH
Cca06g01586 06 31016020 31016941 Cca11g01478 11 37392595 37394030 PCT