Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01582 ATGACAACAACGGAAGAATCGTGGACAAGTTGGTTGTGTGATTGGGAACCAGAGCACTACAACAACTTCGTGAATCACACCGACACAAACGAGGTTGATGCAAATTTCCCACAAGAGGAGAACTTGCAACACTCCAGCACCATGAGCAATTCCTCTCAAGATGATAAAAATAAAATCTTTGGAGAGAGTCCAGCAAACACACTCAAAACTGGCACTTCAAACTCTGCTAACACCGAGTATCTCTCACAAAAGAACGATTCTTCTCTCTCCTACATTCTTTCCTTTGACAATGTTGTGAATCCAGCACCAGTACTGAACATTGACTCCACTACCATGAAGCCAAAAGATGGCAAGGTTGCGAGAAATCAAAATAAGGAACCAAAAAACAACAACTCCGTCTCTTTGTCCAGATCTCCTCTCCATGCCAGAGATCATATAATTGCTGAGAGAAAGAGGAGAGAAAAGATTAGCCAGCAGTTCATAGCTCTTTCAGCCCTTATTCCAGGCCTCAAAAAGATGGACAAGGCCTCGGTGCTAGGGGACGCTATAAAGCACGTGAAAGAGCTGCAAGAGCAAGTGAAGCTATTGGAAGAGCAGAACAAAAGGAAGAGGGTAGAGTCCATGGTATATGTTGAGAAATCTAAGTTATCTTGGGATGAAGATGTCTCAGACACCTCATCAAATTCTGGTGACGGAAACTCCTATGGCCCCTCAAAAACAAATGCATCATCACTTCCGGAAGTTGAGGCAAGGGTGTCAGAGAAGCACGTGCTGATCCGAATCCACTGTGACAAACAAAGGGGACTCTTCATGAACATACTCAAAGAGGTTGAGAATCTTCACCTATCAGTCATGAATAGCAGTATCTTGCTTTTCGGGACCTCCAAATTGGACATAACCATCGTAGCAGAGATGGAGCAAGAGTTTGGGCTGAGCGTGAAGGAGTTGGCTAGAAACCTTCGAGTGGGATTGATGCAATTTATGTAG 987 0.4407 MTTTEESWTSWLCDWEPEHYNNFVNHTDTNEVDANFPQEENLQHSSTMSNSSQDDKNKIFGESPANTLKTGTSNSANTEYLSQKNDSSLSYILSFDNVVNPAPVLNIDSTTMKPKDGKVARNQNKEPKNNNSVSLSRSPLHARDHIIAERKRREKISQQFIALSALIPGLKKMDKASVLGDAIKHVKELQEQVKLLEEQNKRKRVESMVYVEKSKLSWDEDVSDTSSNSGDGNSYGPSKTNASSLPEVEARVSEKHVLIRIHCDKQRGLFMNILKEVENLHLSVMNSSILLFGTSKLDITIVAEMEQEFGLSVKELARNLRVGLMQFM 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01582 328 MobiDBLite consensus disorder prediction 41 75 - -
Cca06g01582 328 Gene3D - 141 212 IPR036638 GO:0046983
Cca06g01582 328 MobiDBLite consensus disorder prediction 105 141 - -
Cca06g01582 328 MobiDBLite consensus disorder prediction 124 138 - -
Cca06g01582 328 Pfam Helix-loop-helix DNA-binding domain 145 190 IPR011598 GO:0046983
Cca06g01582 328 SMART finulus 146 195 IPR011598 GO:0046983
Cca06g01582 328 MobiDBLite consensus disorder prediction 221 246 - -
Cca06g01582 328 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 2 325 - -
Cca06g01582 328 Coils Coil 179 206 - -
Cca06g01582 328 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 140 189 IPR011598 GO:0046983
Cca06g01582 328 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 145 208 IPR036638 GO:0046983
Cca06g01582 328 MobiDBLite consensus disorder prediction 220 246 - -
Cca06g01582 328 CDD bHLH_AtNAI1_like 141 214 - -
Cca06g01582 328 PANTHER BHLH TRANSCRIPTION FACTOR 2 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01582 Cca-Chr6 30948104 30950070 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01582 135 328 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 52.577 7.25e-61 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca06g01582 HLH 3.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01582 - - gmx:100816024 412.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01582 06 30948104 30950070 Cca11g01473 11 37257628 37259520 PCT