Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01580 ATGGATTCTTTTGCATGCCCACCACTTGATGACTTTGACTTTGAATCTTTCTCAGGGTCCCCAGAGAGCAATTCCTCCTATCAGTTCAACTCCGAAAGCACACCAAATTGTTTCCCAGTTGAAAGTCTTGATCAGTCTTATTCTCCTGCAAGACCAATTACCAAGAGGCTCAAGAAATTCAGTACCTTGAACACTACTTGTGCCGGTGACCTAACACCACACAAGGTTTCTGCTTCTCCATACTCCCAACTAATTTCCTTTGGCCACTTTAATGCCCCATCAGGTGCTCCCAAGCAATTTGACAACTATGTAAAGCCTAAAATCGAGAACACGTATAGTGAGAACATGGATTTTTCAGCCTTCGTTTCTCAAGGTTCATATGAGGACAAAAGTTTCCTATCTTCTGATAATCTAACGAATCAGCCTGTTATAACTACTCGGAACCCAATCCAAGCCCAAGAGCACGTAATAGCTGAAAGAAAACGAAGGGAAAAACTAAGCCAGAGATTCATCGCTCTTTCTGCCATCCTTCCTGGCCTCAAGAAGATGGACAAGGCTTCTGTGTTGGGAGATGCTATCAAGTATGTGAAACAACTACAAGAGCGCGTGCAAACTCTGGAGGAGCAAGCAGCGAAGAGAACAGTTGGATCTTCAGTCCTGGTGAAAAGATCTATTCTCTTCGCCGACGATGACGATTCTGACAGCCACTTCGACCATTCACTCCCCGAAATCGAAGTCAGAGTTTCTGGAAAAGACGTACTCATCAGAACACAAAGCGACAAACACAGTGGACTTGCTGCAGTGATTCTCAGCGAATTAGAAAAGCTTCATTTCATGGTCCAAAGTAGCAGCTTTTTGCCCTTCGGCAATAACAAAATTGACGTAACTATTATTGCTCAGATGAACAAGGAAAAGTGCATGACAGCAAAGGATCTCCTAGGAAGGTTAAGAGAGGCTTTGAGTCAGTTGATTTGA 975 0.4359 MDSFACPPLDDFDFESFSGSPESNSSYQFNSESTPNCFPVESLDQSYSPARPITKRLKKFSTLNTTCAGDLTPHKVSASPYSQLISFGHFNAPSGAPKQFDNYVKPKIENTYSENMDFSAFVSQGSYEDKSFLSSDNLTNQPVITTRNPIQAQEHVIAERKRREKLSQRFIALSAILPGLKKMDKASVLGDAIKYVKQLQERVQTLEEQAAKRTVGSSVLVKRSILFADDDDSDSHFDHSLPEIEVRVSGKDVLIRTQSDKHSGLAAVILSELEKLHFMVQSSSFLPFGNNKIDVTIIAQMNKEKCMTAKDLLGRLREALSQLI 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01580 324 Gene3D - 151 218 IPR036638 GO:0046983
Cca06g01580 324 CDD bHLH_AtNAI1_like 152 224 - -
Cca06g01580 324 PANTHER BHLH TRANSCRIPTION FACTOR 1 322 - -
Cca06g01580 324 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 150 199 IPR011598 GO:0046983
Cca06g01580 324 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 154 214 IPR036638 GO:0046983
Cca06g01580 324 Coils Coil 189 209 - -
Cca06g01580 324 Pfam Helix-loop-helix DNA-binding domain 153 200 IPR011598 GO:0046983
Cca06g01580 324 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 1 322 - -
Cca06g01580 324 SMART finulus 156 205 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01580 Cca-Chr6 30919374 30921977 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01580 73 324 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 42.586 2.02e-57 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca06g01580 HLH 3.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01580 - - gmx:100791810 484.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01580 06 30919374 30921977 Cca11g01472 11 37208030 37210331 PCT