Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01579 ATGAGTGAGTTACAGTTTGGGGGACTCACTCTTTGTACCCTTCACCAACACTCTTCTCACTCTTCCACACCCAAAATGCGTttcctctatcttcttcttctccttctccattttcATTATCACCAAACCCTATCTGCGCCAATATCAGAATACCGCGCTCTTCTCTCTCTCCGTTCAGCCATTACCGACGCCACTCCACCTGTCCTCTCTTCATGGAACGCCTCCACCACTTACTGTTCTTGGCTCGGTGTCACCTGCGACAGCCGCCGCCACGTCACCGCCCTCAACCTCACCGCCCTCGGCCTCTCCGGCGCCCTTTCAGCCGACGTCGCTCACCTCCCGTTTCTCACCAACCTCTCCCTCGCGGCTAACCATTTCTCCGGCCCCATCCCTCCCTCCCTCTCCGCTGTCGCCGGCCTCCGCCACCTCAACCTCTCCAACAATGTCTTCAACGGCACCTTCCCCTCCGAGCTCGCGCGCCTCCAGAACCTCGAGGTCCTCGACCTCTACAACAACAACATGACCGGCGAGCTCCCCCTCGCCGTCGCCGAGATTCCCACCCTCCGCCACTTGCACCTCGGCGGCAACTTCTTCTCCGGCCAGATCCCGCCGCAGTACGGACGCTGGCCCCGCCTCGAATACCTGGCCGTCTCCGGCAACGAGCTCGACGGAAAAATCCCACCGGAGATCGGCAACCTCACCAGCCTCCGGGAGCTTTATCTTGGATATTTCAACACCTACGCCGGCGGCATTCCGCCGGAGATCGGGAACTTGTCGGAGCTCGTGAGGCTCGACGCCGCCTACTGCGGCCTCTCCGGCGAGATCCCGGCGGAGCTGGGGAAGCTGCAGAAGCTGGATACGCGCTTCCTCCAGGTGAATGCCCTTTCGGGGTCTCTCACGCCGGAGCTGGGGAACCTGAAGAGTCTTAAATCAATGGATTTGTCTAACAACATGCTCTCCGGTGAGATTCCGGCGAGCTTTGGCGAGCTGAAGAACATGACGCTTCTGAATCTGTTCAGGAACAAGCTTCATGGAGCAATACCGGAGTTTATAGGGGAGCTTCCGGTTTTGGAGGTGGTGCAACTGTGGGAGAATAACTTCACAGGTAGCATTCCAATGGGTTTGGGGAAGAATGGAAGAATCACTCTTGTTGATCTTTCTTCTAACAAATTAACTGGAACTTTGCCTCCTAACTTGTGTTCTGGGAACACTCTTCAAACTTTGATAACTCTTGGAAACTTCTTATTTGGTCCAATTCCTGAATCTCTTGGAAGTTGTCAATCCCTGAACCGGATTCGAATGGGAGAGAACTTTCTGAATGGTTCCATTCCGAAGGGTCTTTTTGGACTTCCAAAACTCACGCAGGTTGAGCTTCAGGATAATTATCTCTCTGGAGAGTTTCCTGAGGCTGATTCTGTTTCTGCTAATCTTGGTCAGATTACTCTCTCTAACAACCAACTCTCTGGGCCTTTGCCTCCTTCCATTGGTAACTTTTCCAGCGTGCAGAAGCTTCTTCTTGATGGCAACATGTTCTCGGGTTGGATCCCTCCTCAGATTGGGAAGTTGCAACAGCTTTCCAAGATTGATTTTAGTGGCAACAAGTTTTCGGGTACTATTGCGCCTGAGATCAGTCATTGCAAGCTGTTAACCTTCCTTGATCTTAGCCGCAATGAGCTCTCTGGGGAGATCCCAAATGAGATCACTGGCATGAGGATTTTGAATTACCTTAACCTTTCGAGGAACCATCTTGTGGGTAGCATTCCCTCCTCGATATCCTCGATGCAGAGTTTAACTTCTGTTGATTTTTCCTACAACAATCTGTCTGGTTTGGTGCCTGGTACTGGTCAATTCAGCTACTTCAACTTCACGTCTTTCTTGGGAAACCCTGACCTGTGTGGTCCCTATTTGGGTGCTTGCAAGGATGGGGTTGCCAATGCTGCTCACCAACCTCATGTCAAAGGACTCTCCTCTTCTCTGAAGCTGATTCTCGTTGTTGGGTTGCTTGCATGTTCCATTATTTTTGCTGTGGCTGCAATATTCAAGGCTCGCTCGCTGAAGAAGGCTAGTGAGGCTCGCGCATGGAAGTTGACTGCGTTCCAACGTTTGGACTTCAGTGTTGATGATGTTTTGCATTGCTTGAAGGAGGATAATATTATAGGGAAAGGAGGTGCTGGCATTGTCTACAAAGGGGCTATGCCCAATGGGGATCAGGTTGCTGTAAAGAGGCTTCCGGCTATGAGTAGAGGCTCTTCCCATGATCATGGGTTCAATGCGGAGATTCAGACATTGGGGCGAATCCGACACAGGCACATTGTTAGGTTGTTGGGTTTCTGTTCAAACCACGAGACAAACCTTTTGgtctacgagtacatgcccaatggaagtttaggtgaggttcttcatggaaagaaagggggtcatttgcactgggacaccaggtataaaattgcggtggaggctgctaaggggctttgctatcttcaccatgattgttctccactcattgtccatcgtgatgtgaagtcaaacaacatccttcttgattctaatcatgaagcacatgttgctgattttgggcttgccaaGTTCCTCCAAGATTCTGGGACATCTGAATGCATGTCTGCTATTGCTGGCTCATACGGATACATTGCTCCAGAATATGCCTACACATTGAAGGTTGATGAGAAAAGCGATGTGTACAGTTTTGGTGTGGTTCTTTTGGAACTTATAACAGGCAGGAAACCAGTTGGAGAATTTGGTGACGGTGTGGACATTGTGCAATGGGTGAGGAAAATGACGGACTCTAACAAGGAAGGTGTTCTTAAAGTTCTTGATTCTAGGCTTCCCTCGGTTCCCCTTCACGAAGTGATGCATGTTTTCTATGTAGCCTTGCTGTGTGTTGAAGAACAAGCTGTAGAGAGACCTACTATGCGAGAAGTTGTTCAAATTCTAACAGAGCTTCCAAAGCCGCCCGACTCTAAAGAGGGGGACTTTACAATAACTGAATCCTCTCTGTCATCATCAAATGCTTTAGAATCTCCATCCTCAGCCTCTAAAGATCATCAAAATCCTCCTCAATCCCCACCACCCGATCTTCTTAGCATTTGA 3108 0.462 MSELQFGGLTLCTLHQHSSHSSTPKMRFLYLLLLLLHFHYHQTLSAPISEYRALLSLRSAITDATPPVLSSWNASTTYCSWLGVTCDSRRHVTALNLTALGLSGALSADVAHLPFLTNLSLAANHFSGPIPPSLSAVAGLRHLNLSNNVFNGTFPSELARLQNLEVLDLYNNNMTGELPLAVAEIPTLRHLHLGGNFFSGQIPPQYGRWPRLEYLAVSGNELDGKIPPEIGNLTSLRELYLGYFNTYAGGIPPEIGNLSELVRLDAAYCGLSGEIPAELGKLQKLDTRFLQVNALSGSLTPELGNLKSLKSMDLSNNMLSGEIPASFGELKNMTLLNLFRNKLHGAIPEFIGELPVLEVVQLWENNFTGSIPMGLGKNGRITLVDLSSNKLTGTLPPNLCSGNTLQTLITLGNFLFGPIPESLGSCQSLNRIRMGENFLNGSIPKGLFGLPKLTQVELQDNYLSGEFPEADSVSANLGQITLSNNQLSGPLPPSIGNFSSVQKLLLDGNMFSGWIPPQIGKLQQLSKIDFSGNKFSGTIAPEISHCKLLTFLDLSRNELSGEIPNEITGMRILNYLNLSRNHLVGSIPSSISSMQSLTSVDFSYNNLSGLVPGTGQFSYFNFTSFLGNPDLCGPYLGACKDGVANAAHQPHVKGLSSSLKLILVVGLLACSIIFAVAAIFKARSLKKASEARAWKLTAFQRLDFSVDDVLHCLKEDNIIGKGGAGIVYKGAMPNGDQVAVKRLPAMSRGSSHDHGFNAEIQTLGRIRHRHIVRLLGFCSNHETNLLVYEYMPNGSLGEVLHGKKGGHLHWDTRYKIAVEAAKGLCYLHHDCSPLIVHRDVKSNNILLDSNHEAHVADFGLAKFLQDSGTSECMSAIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELITGRKPVGEFGDGVDIVQWVRKMTDSNKEGVLKVLDSRLPSVPLHEVMHVFYVALLCVEEQAVERPTMREVVQILTELPKPPDSKEGDFTITESSLSSSNALESPSSASKDHQNPPQSPPPDLLSI 1035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01579 1035 SUPERFAMILY L domain-like 377 636 - -
Cca06g01579 1035 Gene3D Transferase(Phosphotransferase) domain 1 791 1002 - -
Cca06g01579 1035 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 27 1025 - -
Cca06g01579 1035 Gene3D Ribonuclease Inhibitor 286 353 IPR032675 -
Cca06g01579 1035 Gene3D Ribonuclease Inhibitor 208 285 IPR032675 -
Cca06g01579 1035 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 27 1025 - -
Cca06g01579 1035 Pfam Leucine Rich Repeat 308 330 IPR001611 GO:0005515
Cca06g01579 1035 SUPERFAMILY Protein kinase-like (PK-like) 709 984 IPR011009 -
Cca06g01579 1035 Pfam Leucine rich repeat N-terminal domain 49 87 IPR013210 -
Cca06g01579 1035 SUPERFAMILY RNI-like 95 429 - -
Cca06g01579 1035 Gene3D Ribonuclease Inhibitor 354 646 IPR032675 -
Cca06g01579 1035 SMART serkin_6 713 983 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g01579 1035 MobiDBLite consensus disorder prediction 988 1035 - -
Cca06g01579 1035 MobiDBLite consensus disorder prediction 997 1022 - -
Cca06g01579 1035 ProSitePatterns Serine/Threonine protein kinases active-site signature. 835 847 IPR008271 GO:0004672|GO:0006468
Cca06g01579 1035 Pfam Protein tyrosine and serine/threonine kinase 715 984 IPR001245 GO:0004672|GO:0006468
Cca06g01579 1035 Gene3D Phosphorylase Kinase; domain 1 679 790 - -
Cca06g01579 1035 ProSiteProfiles Protein kinase domain profile. 713 987 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g01579 1035 Gene3D Ribonuclease Inhibitor 48 207 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01579 Cca-Chr6 30892837 30897474 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01579 37 1014 Receptor kinase-like Gene Family AT5G65700 80.446 0.0 1599
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Cca06g01579 PK_Tyr_Ser-Thr 3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01579 - - ccaj:109800149 2029.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01579 06 30892837 30897474 Cca11g01469 11 37139625 37143463 PCT