Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01576 ATGAAGAAACAACCCTTGTTGCTCCTTTTATTTTTATGTTTAAGTGGTGGTTTATCTCAAGGGGTGTCCTTACAAAGAGAATCTCAAATTCTACTTGAGGTCAAGAACACCCAGCTCCAAGACAAAAACAAGAGTCTGAAAAACTGGGTGCCCAACACACACCACAACAACCCCTGCAACTGGACCGGCATTACCTGCGACGCACGACAACAATCACTTCTCACCATTGACCTCTCCGAAACTGGCATCTACGGTGACTTCCCCTCCGGCTTTTGTCGCATTCACACCCTCCAAAACCTTTCCCTTGCATCCAATTTTCTCGCCAACGCCATCCCCAACTCTCTCCTTCTCTGCTCCCACCTCCGTCTCTTGAACCTCTCCGACAACTACTTCGTCGGAGACCTGCCGGAATTCCCGCCGGAGTTCACCCAACTCAGAGTACTAGACCTCTCCAAAAACAACTTCAGCGGCGACATTCCGGCGAGTTTCGGAAATCTTCCACGCCTGAGAGTGCTTACTTTATTCGGTAACCTTCTCGGCGGGACGATTCCTCCCTCTTTAGGCAAACTCAGCGAGCTAACTCGTTTGGAACTAGCTTATAATCCCCTCAAACCAGGACCTTTACCTTCCCAACTAGGAAACCTCTCTAACCTCGAAACTCTGTTCCTAGCCGAACTAAACCTCGTTGGGGAAATTCCACACTCCATTGGGAACCTCACCAAGCTCAAAAACTTGGATTTGTCTCAAAACTCCTTGTCAGGTGAAATCCCGAACAGCATTTCACTTCTGAAAAACGTGCAACAAATTGAACTATTCCAAAACCTTCTTTCCGGCGAGCTACCCCAAGGTTTGGGAAACCTAAGCAGTTTAATTCGCTTGGACCTCTCTCAGAACTCTCTCACCGGAAAATTACCTCACACAATCGCTTCATTGCACCTCTATTCTCTGAACCTCAACGACAACCTCCTCGGTGGAGAAATTCCTGAAAGTTTAGCTTCAAACCCTAATTTGCAACAGCTTAAACTCTTCAACAACAGCTTCATTGGTAAACTCCCACGAGATCTGGGGCGAAACTCTGAAATTCAGGAATTTGATGTCTCAACTAATGATTTCACGGGAGAGTTGCCAAGGTACCTATGTCAGGGGAAGAAACTGGAGCGTCTCATCACGTTCGCGAATCGCTTCTCTGGAACGCTTCCTAACGAGTACGGCGAGTGTGGTTCGCTTCAATATGTCAGAATCCAGAACAACGAACTCTCGGGCCTGGTGCCGCCAACGTTTTGGGCCCTTACTGGGCTTCAGTTTCTGGAAATGTCCAACAACAGGTTCCAAGGTTCTGTTTCCGCTTCTTCCAGGGGACTCACCAAACTCATTTTATCCGGCAACGCTTTTTCTGGCGAATTCCCAACGGGAATCTGCGAACTTCACAACCTCGTGGAGATTGACGTCAGCATTAACCGCTTCACCGGGGAAGTTCCCACGTGCGTAACCGGTTTGAGTAAGTTGCAGAAACTCAGAATGCAAGAGAACATGTTCACCGGCGAGATTCCAAGTAATGTGAGCCTTTGGAGTGACATGGCAGAGTTGAACTTGTCGTTTAACAGGTTCACCGGTTCAATCCCGCCGGAGCTCGGTAATTTGCCGGATTTAACGTACCTTGATCTCGCCGATAATTATTTAACGGGGGAGATTCCGGTGGAGTTGACGAACTTAAGGCTGAACCAGTTCAACGTGTCTGATAACAAGTTGCACGGGGAGGTTCCTATGGGTTTCAACCACCAAATTTACTTATTGGGTCTAACCGGAAACCCGGGTCTGTGTAGTGCCGTTATCAAAACCCTTCCTTCATGCTCCAAACGCAGGCCGTTTTCTCTGCTTGCGATTGTCGTTTTGGTTGCCTGCGTTTCGCTCCTTGTGGGGTCCACGTTGTGGTTCCTGAAGAGCAAGGGTTTTGGCGGGAAGTCCAAGCGTTCGTTTATGTCAACGGCGTTTCAGAGAGTGGGGTTCAATGAAGAAGACATAGTTCCCAACTTGACGAGTGAGAACGTGATTGGCACTGGGAGTTCGGGTAGGGTTTACAGGGTGAGGCTTAAGACGGGACAGACGGTGGCGGTGAAGAAGCTGTTCTGCGGTGCGCAGAAGCCTGACACGGAATTGGTGTTCAGGGCGGAGATTGAGACGTTGGGTAGGATTCGGCATGCCAATATTGTGAAACTGTTGTTTAGTTGCAGTGGTGATGAGTTTAGGATATTGGTGTATGAGTACATGGAGAATGGGAGCTTAGGGGATGTGTTGCATGGTGATGATAAGTATGGAGAGTTGATGGATTGGTCTAGAAGGTTTGCCATTGCTGTAGGTGCGGCTCAAGGGTTGGCTTATTTACATCATGATTGTGTGCCTGCTATTGTTCATAGAGACATAAAGAGTAATAACATTTTGTTAGACCATGAATTTGTGCCAAGAGTAGCAGACTTTGGGCTTGCTAAGACATTGCAACGTGAGGCCACCCAGGGTGTTGCTATGTCTAGGGTTGCTGGATCATATGGTTACATTGCTCCAGAGTATGGTTATACAATGAAAGTGACTGAGAAGAGCGATGTGTATAGTTTCGGGGTGGTGCTGATGGAACTGATCACTGGAAAGAGGCCTAATGACTCTGCATTTGGTGAGAATAAGGATATAGTGAAATGGGTCACTGAGACTGTTTTATCACCGTCTCCTGAAAGAGGAAGTCGCAATATGGGGGGTAGTAAAGATTATATTATGTCCCAGATTGTGGACCCAAGATTGAATCTAGCCACTTGTGATTATGAGGAGATTGAGAAGAGTGCAACTTCCCATGATTCATTAGTTGGTGTCTTCCATTACAAACCTTTTGATGACAAGGTGGACTGGAGGATGGTTGCCAAAGCTTCTCCATGTTACATGACTTATATGAAGGACAGCATTGATCAAATTGTGAAATTCTTTGAAAGTAATACTGCTGTCAGTCAGACCATAGCACTAGAAACTGCAGAATACTCAGAGGTTGAAGAAAACACGGACTTGTATCCCTCCGTCAAAGGAAGGTTCAGGCAAAATCATCTTTCATTACAACCCATGGATAACCAATTCGGTTTCTTTATTAATCAAGAAACTAGGAACCGGGAGGATAATGCACTAGGAAATGTGAATGCTAGTTCGACCGGCAATATTAGTATTCCTTTACGGTCAAGAACAACCTTTTGGCATCCTGGTCAACCCGCTGCTAGTTGTCCATCACATGGAGCAAATGTCCCTATCCTTCACACCATCCCTGGTACTGGCTTTTCAGGAGGACCAACGCAGACTTCACTTCCCAATATTACTAGCTTTCCAGATTCTAGGGATGCATCCTTGTACATGGCTCAGTTGTACCAAATGCAGCGTCCTCGTGCTTACAGTTACACTTCTCCTTCAGCAACTCCTAGGATGCCTGGAGAGAGTTCTAACCGAGGAAGAAATATTGAAGCACGAACAGCACTTCATGAGGGTTACCTACAACTTTTCCAAGCTCAGTCAGCGGAGAATCATCGGCTTCAGAATGAAATAAATAAATTGCAAGCTGAAATTTCTGATTACAAGGATCGGCTAAAGAAGCTTGAAGAACAAGTGTCCTTACTCAATCAGAAAGCTGAAGAAACAGCACAGGCACCAAAAAAGAGAGGGAGGCCTAAGCAGTCAATGGTGGATGCATTATACGAGTCTCACCTCACTGCTGGTGGTAGAAATCTTGCATCAAATAACAATCTGCCTCAAAGTAAAGCAAATGTTATTTTTGGAAAGGATAAAGACTTGAAACTTGTCTGCACTGAACCATCACAACCAGATAATAAAGTGTTTAACAATAGAATGGATGTTGGAAATACTAGTAATAGGAATCTTGGGTTGATTCTTGGCATACCTTCTCAAAACACCGTAAAGAATATGTTAGATGTAAACCCTCAAGGTTTCTCCCATAATAATGCCACTTTCATCCAACAAGGAGGAAGCACGACTCGTGGAGGGATTTTATATGCAAATCAAGATCATATCGAAGTATCATCTGAAGGTGAAAATGAAGTGATGGAAGAGGAAGACAATGTTCGTTAA 4110 0.456 MKKQPLLLLLFLCLSGGLSQGVSLQRESQILLEVKNTQLQDKNKSLKNWVPNTHHNNPCNWTGITCDARQQSLLTIDLSETGIYGDFPSGFCRIHTLQNLSLASNFLANAIPNSLLLCSHLRLLNLSDNYFVGDLPEFPPEFTQLRVLDLSKNNFSGDIPASFGNLPRLRVLTLFGNLLGGTIPPSLGKLSELTRLELAYNPLKPGPLPSQLGNLSNLETLFLAELNLVGEIPHSIGNLTKLKNLDLSQNSLSGEIPNSISLLKNVQQIELFQNLLSGELPQGLGNLSSLIRLDLSQNSLTGKLPHTIASLHLYSLNLNDNLLGGEIPESLASNPNLQQLKLFNNSFIGKLPRDLGRNSEIQEFDVSTNDFTGELPRYLCQGKKLERLITFANRFSGTLPNEYGECGSLQYVRIQNNELSGLVPPTFWALTGLQFLEMSNNRFQGSVSASSRGLTKLILSGNAFSGEFPTGICELHNLVEIDVSINRFTGEVPTCVTGLSKLQKLRMQENMFTGEIPSNVSLWSDMAELNLSFNRFTGSIPPELGNLPDLTYLDLADNYLTGEIPVELTNLRLNQFNVSDNKLHGEVPMGFNHQIYLLGLTGNPGLCSAVIKTLPSCSKRRPFSLLAIVVLVACVSLLVGSTLWFLKSKGFGGKSKRSFMSTAFQRVGFNEEDIVPNLTSENVIGTGSSGRVYRVRLKTGQTVAVKKLFCGAQKPDTELVFRAEIETLGRIRHANIVKLLFSCSGDEFRILVYEYMENGSLGDVLHGDDKYGELMDWSRRFAIAVGAAQGLAYLHHDCVPAIVHRDIKSNNILLDHEFVPRVADFGLAKTLQREATQGVAMSRVAGSYGYIAPEYGYTMKVTEKSDVYSFGVVLMELITGKRPNDSAFGENKDIVKWVTETVLSPSPERGSRNMGGSKDYIMSQIVDPRLNLATCDYEEIEKSATSHDSLVGVFHYKPFDDKVDWRMVAKASPCYMTYMKDSIDQIVKFFESNTAVSQTIALETAEYSEVEENTDLYPSVKGRFRQNHLSLQPMDNQFGFFINQETRNREDNALGNVNASSTGNISIPLRSRTTFWHPGQPAASCPSHGANVPILHTIPGTGFSGGPTQTSLPNITSFPDSRDASLYMAQLYQMQRPRAYSYTSPSATPRMPGESSNRGRNIEARTALHEGYLQLFQAQSAENHRLQNEINKLQAEISDYKDRLKKLEEQVSLLNQKAEETAQAPKKRGRPKQSMVDALYESHLTAGGRNLASNNNLPQSKANVIFGKDKDLKLVCTEPSQPDNKVFNNRMDVGNTSNRNLGLILGIPSQNTVKNMLDVNPQGFSHNNATFIQQGGSTTRGGILYANQDHIEVSSEGENEVMEEEDNVR 1369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01576 1369 Pfam Leucine rich repeat 144 203 IPR001611 GO:0005515
Cca06g01576 1369 SMART serkin_6 678 975 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g01576 1369 ProSiteProfiles Protein kinase domain profile. 678 950 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g01576 1369 SMART LRR_sd22_2 430 456 - -
Cca06g01576 1369 SMART LRR_sd22_2 475 501 - -
Cca06g01576 1369 SMART LRR_sd22_2 239 268 - -
Cca06g01576 1369 SMART LRR_sd22_2 287 313 - -
Cca06g01576 1369 SMART LRR_sd22_2 190 217 - -
Cca06g01576 1369 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 9 942 - -
Cca06g01576 1369 ProSitePatterns Serine/Threonine protein kinases active-site signature. 802 814 IPR008271 GO:0004672|GO:0006468
Cca06g01576 1369 SMART LRR_typ_2 499 523 IPR003591 -
Cca06g01576 1369 SMART LRR_typ_2 430 453 IPR003591 -
Cca06g01576 1369 SMART LRR_typ_2 166 190 IPR003591 -
Cca06g01576 1369 SMART LRR_typ_2 287 311 IPR003591 -
Cca06g01576 1369 SMART LRR_typ_2 547 571 IPR003591 -
Cca06g01576 1369 SMART LRR_typ_2 142 165 IPR003591 -
Cca06g01576 1369 SMART LRR_typ_2 239 263 IPR003591 -
Cca06g01576 1369 Coils Coil 1176 1224 - -
Cca06g01576 1369 Gene3D Ribonuclease Inhibitor 309 620 IPR032675 -
Cca06g01576 1369 Pfam Protein kinase domain 680 887 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g01576 1369 Pfam Leucine Rich Repeat 289 311 IPR001611 GO:0005515
Cca06g01576 1369 Pfam Leucine Rich Repeat 241 261 IPR001611 GO:0005515
Cca06g01576 1369 ProSitePatterns Protein kinases ATP-binding region signature. 684 707 IPR017441 GO:0005524
Cca06g01576 1369 SUPERFAMILY RNI-like 71 382 - -
Cca06g01576 1369 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE HSL2 9 942 - -
Cca06g01576 1369 Gene3D Transferase(Phosphotransferase) domain 1 756 951 - -
Cca06g01576 1369 ProSiteProfiles Leucine-rich repeat profile. 241 263 IPR001611 GO:0005515
Cca06g01576 1369 Gene3D Ribonuclease Inhibitor 24 308 IPR032675 -
Cca06g01576 1369 Gene3D Phosphorylase Kinase; domain 1 660 755 - -
Cca06g01576 1369 Pfam Leucine rich repeat N-terminal domain 26 67 IPR013210 -
Cca06g01576 1369 SUPERFAMILY L domain-like 311 618 - -
Cca06g01576 1369 SUPERFAMILY Protein kinase-like (PK-like) 672 907 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01576 Cca-Chr6 30862032 30868187 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01576 22 942 Receptor kinase-like Gene Family AT5G65710 56.946 0.0 1016
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Cca06g01576 Pkinase 1.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01576 - - gmx:100813889 1577.76