Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01569 ATGGGTCTTCATCAGGATGCCAATACCTCAGGCCTTCACCTCGTTCTAGGGCTATCTTTGACTGCTACCACAAAGGAAACCGCTCCATCCACCAAACCCGATGATCATCTTATTAAGCCAACACCATCCAAGCCTTATTATTCCTCCAACGAACCGTCCTTAACGTTGGGTCTGTCCGGTGAGAGTAACCACGTCGCCAAGCTAGTTCCAAGAAACAACGTTGTTGCCAACAACAAGGTTTATTGCGAGGACCCTCTTGAGTTGTCTAGACAGACCTCACCTCACAGCGTGGTTTCGTCTTTCTCAACTGGAAGGGTCGTCAAAAGGGAGAGGGACCTTAGCTGTGAAGATATAGAGGTAGAGGTAGAAGAGAGGGTTTCTTCAAGAGTCAGTGACGAAGACGAAGACGGAAACAATGCTAGAAAAAAACTCAGGCTCACCAAAGAACAATCAGCACTCCTTGAGGACAGCTTCAAACAACACAGCACTCTCAATCCTAAACAGAAGCAAGCTTTAGCCAGGCAGTTAAATCTACGTCCTCGACAAGTTGAAGTGTGGTTCCAGAATCGGAGAGCTAGAACAAAGCTGAAGCAAACGGAGGTGGACTGTGAGTTCTTAAAGAAATGCTGTGAAACGTTGACGGACGAAAACAGGAGGCTAAAGAAGGAGCTTCAAGAGCTGAAGGCACTGAAGCTAGCGCAGCCCTTGTACATGCCTATGCCTGCGGCCACACTCACCATGTGCCCCTCTTGCGAGAGGCTCAACGATAACGCTTCAAATAAAAGCCCTTTCTCCATGGCTCCCAAGCCTCACTTTTACAACCCCTTCGCCAATCCTTCTGCAGCATGTTGA 852 0.4836 MGLHQDANTSGLHLVLGLSLTATTKETAPSTKPDDHLIKPTPSKPYYSSNEPSLTLGLSGESNHVAKLVPRNNVVANNKVYCEDPLELSRQTSPHSVVSSFSTGRVVKRERDLSCEDIEVEVEERVSSRVSDEDEDGNNARKKLRLTKEQSALLEDSFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLKKELQELKALKLAQPLYMPMPAATLTMCPSCERLNDNASNKSPFSMAPKPHFYNPFANPSAAC 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01569 283 Pfam Homeobox associated leucine zipper 197 231 IPR003106 GO:0006355|GO:0043565
Cca06g01569 283 ProSitePatterns 'Homeobox' domain signature. 172 195 IPR017970 GO:0000981|GO:0006355
Cca06g01569 283 MobiDBLite consensus disorder prediction 24 52 - -
Cca06g01569 283 Coils Coil 203 233 - -
Cca06g01569 283 CDD homeodomain 141 198 IPR001356 GO:0003677
Cca06g01569 283 Pfam Homeodomain 141 195 IPR001356 GO:0003677
Cca06g01569 283 SMART HOX_1 139 201 IPR001356 GO:0003677
Cca06g01569 283 PANTHER - 11 283 - -
Cca06g01569 283 SUPERFAMILY Homeodomain-like 131 198 IPR009057 -
Cca06g01569 283 ProSiteProfiles 'Homeobox' domain profile. 137 197 IPR001356 GO:0003677
Cca06g01569 283 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT9 11 283 - -
Cca06g01569 283 Gene3D - 134 202 - -
Cca06g01569 283 SMART halz 197 240 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01569 Cca-Chr6 30792625 30794254 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01569 1 283 Homeobox Transcription Factor Family AT4G37790 59.934 1.61e-99 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Cca06g01569 Homeodomain 1.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01569 K09338 - gmx:100795135 462.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01569 06 30792625 30794254 Cca11g01462 11 37033098 37034785 PCT