Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01563 ATGGGAAGGGCTCCTTGCTGTGACAAAGCCAACGTCAAGAAAGGCCCATGGTCACCTGAAGAAGATGCCAAACTCAAGTCTTATATTGAACAACACGGTACTGGTGGCAACTGGATAGCCCTGCCACAAAAAATAGGCCTTAAGAGATGTGGGAAAAGCTGTCGTCTTAGATGGCTTAATTATCTCCGCCCAAACATCAAACATGGGGGTTTCTCAGAAGAAGAAGACAACATCATCTGCAGCCTCTATGTCAGTATTGGAAGCAGGTGGTCAATTATAGCAGCACAGTTACCAGGGCGCACAGACAATGACATAAAGAACTATTGGAACACTAGGTTGAAGAAGAAGCTCCTTGGAAAACAAAGGAAGGAGCAACAGGCTCAAGTTCGCAGAGTCAACAACCCGCAGAAGCAAGATGTGAAAAGAGAAAACGAGAATTTGATAGTGGCTTCTGAAGTCATGAATCAAGTTCCATATTGGTCTGCAGAGTATTCTTCTGTGCCCATGCCAGTGGCCAATGCTTCCTTCCAACACTTTGGTCTCAACAACCAAACATCTCTCAGGAACATGATGGTTAACAAACTAGAGGGAATTAGATTTTCCAACGATcatcatcagcagcagcagcagccgcCATACACCAATGCATGCGAAATTCCCTCACCACCAGACCAGGTTTTTGCAACCACAATGAACATGGTAAATCATGTGGCCGTGGTGAGTGGTGAAAACAATAGCGGCACTTATCAGCCATCAAATATATTTCAAGGGTTTGAAGACTTCTCAGGTGAATTTTGTGAACTGGTCTGCGTGAACCCTCAACAGATGGATCGATCAATGGATCAGGGTTTTGACTATGGAATGGAATCGGTGGACATGAGCAATGGTGGCAGCACGAACACGGCTTCAACAGAAAGCACTAGTTGGGGTGACATGAGCTCTTTGGTTTACTCTCCTTTGGTTTCTGAATATGAAGGTTGCCAACAAGGAATAATTCCTCAAGTTGATATGTTGTTGCTTTCGAAGAGTGTAAGTACTTTGGAATGCAGATGCAATAACAGCTTTGAATACGAGGTGGTGTAA 1083 0.4303 MGRAPCCDKANVKKGPWSPEEDAKLKSYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYVSIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGKQRKEQQAQVRRVNNPQKQDVKRENENLIVASEVMNQVPYWSAEYSSVPMPVANASFQHFGLNNQTSLRNMMVNKLEGIRFSNDHHQQQQQPPYTNACEIPSPPDQVFATTMNMVNHVAVVSGENNSGTYQPSNIFQGFEDFSGEFCELVCVNPQQMDRSMDQGFDYGMESVDMSNGGSTNTASTESTSWGDMSSLVYSPLVSEYEGCQQGIIPQVDMLLLSKSVSTLECRCNNSFEYEVV 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01563 360 Gene3D - 69 146 - -
Cca06g01563 360 CDD SANT 71 113 IPR001005 -
Cca06g01563 360 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Cca06g01563 360 PANTHER OS09G0431300 PROTEIN 1 332 - -
Cca06g01563 360 PANTHER TRANSCRIPTION FACTOR RAX3-LIKE 1 332 - -
Cca06g01563 360 Gene3D - 7 68 - -
Cca06g01563 360 CDD SANT 16 62 IPR001005 -
Cca06g01563 360 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Cca06g01563 360 MobiDBLite consensus disorder prediction 120 142 - -
Cca06g01563 360 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Cca06g01563 360 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Cca06g01563 360 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Cca06g01563 360 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Cca06g01563 360 SMART sant 67 115 IPR001005 -
Cca06g01563 360 SMART sant 13 64 IPR001005 -
Cca06g01563 360 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01563 Cca-Chr6 30731155 30732975 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01563 1 318 MYB Transcription Factor Family AT3G49690 50.000 3.69e-92 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca06g01563 Myb_DNA-binding 2.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01563 K09422 - gmx:106795158 575.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01563 06 30731155 30732975 Cca11g01459 11 36970911 36972406 PCT