Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01560 ATGAAGAATGGCGATACCATTAACATGATCAACCATCAAAATAGTTGGTTAGGTTTCTCCCTCTCCCCACAAATGAATATAGGTCTTCCTTCACACCCTCATCAGACACAACTTTCAGCTGCTGCTGTTGCTGAAATAGTTCCACCAAACTTTTACCACCAAACACCTCTTCATAACTATGGCCTTTACTATGGACTCGAAGGAGAACATGTTGGAATGTGCTCATCCTTGCCTATCACGCCCCTTAAATCCAATCCCTCGCTCTATGGAGTAGAAGCTCTAAGTAGATCACAAGCACAAGCAATGCATCTCAGCTTAGATAGTATGCTTTGCAACCAACTGTCGTGGAATGGACTAAACAATCCAAGTAACCTAAATCACGTACAACAGAATATCAGCCAGCAACAACTCTCATACTACTCTACCTTAAGAAACCATGATGTGATTTTAGAAGGGTCCAAACACCAGCTCTCAAATATAGCTGAGGATGAAATTTCTGGTCTGAAGAGTTGGTACTCAAGGGACTTTCCGACGAGCCATGCACAGGAGTCAAGGATTGTTCCTGTGGAGCATAATGGAGGTGAATCTGGATCCATTGAATCAATGGCATATGGGGATTTACATTCATTGAACTTGTCTGTGAGTTCTACCTCACAATCAAGCTGTGTTACAAGTTCATATGCCCACACTGATACAAAGAAAAGGGGGCTTGAAATGATGGACCAAAATCAGAAGCAAATAGTTCATAGGAAATCCATAGATACCTTTGGTCAAAGAACTTCTCAATATAGGGGTGTAACAAGGCATAGGTGGACTGGTAGATATGAAGCTCATCTATGGGACAACAGCTGCAAGAAAGAGGGGCAAGGCAGGAAAGGAAGGCAAGTTTATCTAGGGGGTTATGATGTGGAGGAAAAAGCTGCAAGAGCTTATGATATGGCCGCACTCAAGTATTGGGGACCCTCCTCTCATATAAATTTTCCATTGGAAAATTATCAAAAAGAACTTGAGGAAATGAAGAACATGACTAGACAAGAATATGTTGCTCATTTACGAAGGAAAAGCAGTGGATTCTCAAGAGGGGCTTCCATATACAGAGGAGTAACAAGGCACCATCAACATGGAAGGTGGCAAGCTCGAATTGGCAGAGTGGCTGGAAACAAAGATCTATATCTTGGAACTTTCAGTACCCAAGAGGAAGCAGCTGAAGCCTACGACATTGCTGCTATAAAATTCCGTGGAGTTAATGCTGTTACTAACTTTGATATAACAAGATATGACGTAGAAAAAATTATGGCAAGCAATAACCTTCTTAGCAGTGAACAAGCCAAGAGGAACAAAGAGATGGAGGATGAAACTAGAAACGAGGCTATTGTTAATCAAAAACCTTCTACATATGAGCAAACCGAAGAAAGCGTTCTAATGCAGAAAAGTTGTGAAAGCCAATCAGAGTGGAAGATGGTTCTCTATAGATCCTCCCAACAACAGTATGATCACAATATTCTACCAAGAATTGAGAGTTGTAGAACGCAACCCTTTTCAATGGCTTTTGGTGACATATTTCATCAAGAAGTAGAGGAATTGAGTAACATGGGAACACACTTGTCAAATCCTTCTTCTATGGTGACAAGCTTGAGTAGCTCAAGAGAAGAGAGCCCAGATAAGACAAGCATGCCAATGCTCTTTGGAATGCCTTCAACAGTGTCTAAATTGTTGACTAACACTCCAACAAGTAACGTGGATTCTTGGGATCTATCTTCCAATCACAGGCCTGCGCTTTCTTTGCCTCAGATGCCAATTTTTGCTGCTTGGACTGATGCATAA 1824 0.415 MKNGDTINMINHQNSWLGFSLSPQMNIGLPSHPHQTQLSAAAVAEIVPPNFYHQTPLHNYGLYYGLEGEHVGMCSSLPITPLKSNPSLYGVEALSRSQAQAMHLSLDSMLCNQLSWNGLNNPSNLNHVQQNISQQQLSYYSTLRNHDVILEGSKHQLSNIAEDEISGLKSWYSRDFPTSHAQESRIVPVEHNGGESGSIESMAYGDLHSLNLSVSSTSQSSCVTSSYAHTDTKKRGLEMMDQNQKQIVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQGRKGRQVYLGGYDVEEKAARAYDMAALKYWGPSSHINFPLENYQKELEEMKNMTRQEYVAHLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFDITRYDVEKIMASNNLLSSEQAKRNKEMEDETRNEAIVNQKPSTYEQTEESVLMQKSCESQSEWKMVLYRSSQQQYDHNILPRIESCRTQPFSMAFGDIFHQEVEELSNMGTHLSNPSSMVTSLSSSREESPDKTSMPMLFGMPSTVSKLLTNTPTSNVDSWDLSSNHRPALSLPQMPIFAAWTDA 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01560 607 SMART rav1_2 262 334 IPR001471 GO:0003700|GO:0006355
Cca06g01560 607 SMART rav1_2 364 428 IPR001471 GO:0003700|GO:0006355
Cca06g01560 607 PRINTS Ethylene responsive element binding protein signature 263 274 IPR001471 GO:0003700|GO:0006355
Cca06g01560 607 PRINTS Ethylene responsive element binding protein signature 404 424 IPR001471 GO:0003700|GO:0006355
Cca06g01560 607 SUPERFAMILY DNA-binding domain 261 330 IPR016177 GO:0003677
Cca06g01560 607 MobiDBLite consensus disorder prediction 533 556 - -
Cca06g01560 607 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 146 605 - -
Cca06g01560 607 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 12 104 - -
Cca06g01560 607 MobiDBLite consensus disorder prediction 533 554 - -
Cca06g01560 607 SUPERFAMILY DNA-binding domain 363 423 IPR016177 GO:0003677
Cca06g01560 607 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 146 605 - -
Cca06g01560 607 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 12 104 - -
Cca06g01560 607 ProSiteProfiles AP2/ERF domain profile. 262 328 IPR001471 GO:0003700|GO:0006355
Cca06g01560 607 Gene3D AP2/ERF domain 261 330 IPR036955 GO:0003700|GO:0006355
Cca06g01560 607 Gene3D AP2/ERF domain 364 424 IPR036955 GO:0003700|GO:0006355
Cca06g01560 607 CDD AP2 363 424 IPR001471 GO:0003700|GO:0006355
Cca06g01560 607 ProSiteProfiles AP2/ERF domain profile. 364 422 IPR001471 GO:0003700|GO:0006355
Cca06g01560 607 CDD AP2 261 328 IPR001471 GO:0003700|GO:0006355
Cca06g01560 607 Pfam AP2 domain 262 320 IPR001471 GO:0003700|GO:0006355
Cca06g01560 607 Pfam AP2 domain 364 414 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01560 Cca-Chr6 30644373 30648029 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01560 333 607 AP2-EREBP Transcription Factor Family AT4G37750 24.615 5.16e-15 76.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Cca06g01560 AP2 3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01560 K09285 - gmx:100812275 948.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01560 06 30644373 30648029 Cca11g01456 11 36851092 36855896 PCT