Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01559 ATGCTTTCTGTTTCTGCTCTTCAGGGAAGCGGAAGCCCATTCCGGGCCTTGGCCTTGGACTGGGATGGGCCTCACTTTTTGGGCTCCAAGCCCACCGTCACTTCGAGTTCCGGCTCGGACGACCCCAACCGAACCCCTGAAAAACCGGCCTCGGACGAGTCGAACCGCGTTGCGTCCGTGACAGAGGAGCGAAAACGCAGGCGAATGTTTTCGAACCGGGAATCGGCCCGAAGGTCACGCATGCGTAAACAGAGACACTTAGAGAACTTACGGAACCAGGTGAACCTGTTTAGGGTTGAGAACCGCGAACTGAACAACGGCTTGCACTTCCTCCTTCACCACTGTAACCGCCTACGAACCGAAAACGAGTGGCTCCGGTCCCAAAGAACCCTGCTACTCCAAAAACTGGCCAACATAAATCAACTTTTGCTTTTCCAACAATTGCAATCATTTTCCTCTGCATGGCCCTGCCATATTCTCGAGACCGAATAA 492 0.5366 MLSVSALQGSGSPFRALALDWDGPHFLGSKPTVTSSSGSDDPNRTPEKPASDESNRVASVTEERKRRRMFSNRESARRSRMRKQRHLENLRNQVNLFRVENRELNNGLHFLLHHCNRLRTENEWLRSQRTLLLQKLANINQLLLFQQLQSFSSAWPCHILETE 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01559 163 CDD bZIP_plant_GBF1 65 116 IPR045314 GO:0003700|GO:0006355
Cca06g01559 163 MobiDBLite consensus disorder prediction 29 44 - -
Cca06g01559 163 MobiDBLite consensus disorder prediction 45 77 - -
Cca06g01559 163 PANTHER BZIP TRANSCRIPTION FACTOR 26 162 - -
Cca06g01559 163 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 62 125 IPR004827 GO:0003700|GO:0006355
Cca06g01559 163 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 67 82 IPR004827 GO:0003700|GO:0006355
Cca06g01559 163 SMART brlzneu 60 124 IPR004827 GO:0003700|GO:0006355
Cca06g01559 163 Gene3D - 62 143 - -
Cca06g01559 163 Pfam bZIP transcription factor 64 123 IPR004827 GO:0003700|GO:0006355
Cca06g01559 163 Coils Coil 73 107 - -
Cca06g01559 163 PANTHER BZIP TRANSCRIPTION FACTOR 44 26 162 - -
Cca06g01559 163 MobiDBLite consensus disorder prediction 28 83 - -
Cca06g01559 163 SUPERFAMILY Leucine zipper domain 64 116 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01559 Cca-Chr6 30626065 30627932 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01559 21 147 bZIP Transcription Factor Family AT3G49760 38.060 1.51e-24 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Cca06g01559 bZIP_1 1.7e-10 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01559 - - gmx:102667230 238.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01559 06 30626065 30627932 Cca11g01451 11 36763339 36764303 PCT