Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01546 ATGGGTGCTCCTAAGCAGAAATGGACTGCAGAAGAAGAAGCAGCATTGAAAGCTGGAGTAGTCAAGCATGGGGCTGGAAAATGGCGCACCATACTTACAGACCCAGAGTTCAGTTCCATTTTGCGCATGCGTTCAAATGTAGATCTCAAGGACAAATGGAGGAACATAAATGTGACAGCAATATGGGGATCTAGGCAGAAGGCAAAGCTTGCTCTTAAAAAGAACCTACCATCCCCCAAAATTGACAATAACCACATGGCATTGAGAAATGTAGTTCAACGTGACAAAGAAGTTGCAGATCTCAAGCCTCTGGGAGTTTCTGGTGGAACATCTCCTAATTCAAAGGAAAAAATATCAAGGTTGGATAATCTTATATTAGAGTCCATTATCAAATTGAAGGAGTCAAAGGGTTCTGACAGGGCAGCTATTGCTGCATATATAGAGGATCAATACTGTTCTACACCAACTCTCAGAAAGTTATTGTCAACAAAACTGAAGCATATGGTGGCAAGTGGAAAATTAATGAAGGTAAAGCATAAGTACAGGATTGCAACAAATTTATCAATATCTGAGAAAAGATGCTCTTCCTTGTTACTCTTGGAAGGGAGGCCCAAAGATTCTCCAAAAGCAGAGAAGACTGATGTCAACATCCTTTCAAAATCTGAAATTGATGCAGACAATAAAGGCACTAAAATGCAAGACACTTCATATTTGATGGTGTCAGCTTCTGCATTGTTGACATGA 744 0.4019 MGAPKQKWTAEEEAALKAGVVKHGAGKWRTILTDPEFSSILRMRSNVDLKDKWRNINVTAIWGSRQKAKLALKKNLPSPKIDNNHMALRNVVQRDKEVADLKPLGVSGGTSPNSKEKISRLDNLILESIIKLKESKGSDRAAIAAYIEDQYCSTPTLRKLLSTKLKHMVASGKLMKVKHKYRIATNLSISEKRCSSLLLLEGRPKDSPKAEKTDVNILSKSEIDADNKGTKMQDTSYLMVSASALLT 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01546 247 PANTHER SINGLE MYB HISTONE 4 1 227 IPR044597 GO:0003691
Cca06g01546 247 SMART h15plus2 115 180 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cca06g01546 247 CDD SANT_TRF 6 57 - -
Cca06g01546 247 PANTHER MYB TRANSCRIPTION FACTOR 1 227 - -
Cca06g01546 247 Gene3D - 112 214 IPR036388 -
Cca06g01546 247 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Cca06g01546 247 Pfam linker histone H1 and H5 family 122 179 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cca06g01546 247 SUPERFAMILY Homeodomain-like 2 67 IPR009057 -
Cca06g01546 247 Gene3D - 2 59 - -
Cca06g01546 247 SUPERFAMILY "Winged helix" DNA-binding domain 115 194 IPR036390 -
Cca06g01546 247 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Cca06g01546 247 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 117 185 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cca06g01546 247 SMART sant 4 59 IPR001005 -
Cca06g01546 247 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01546 Cca-Chr6 30498937 30502053 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01546 1 226 Single Myb Histone (SMH) Gene Family AT1G49950 50.216 9.81e-75 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Cca06g01546 Linker_histone 9.7e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01546 K09422 - gmx:778165 400.593
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01546 06 30498937 30502053 Cca11g01429 11 36397783 36403530 PCT