Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01541 ATGGATACGTTGTTCAGGGTAGTAAGTTTGGAAGGCGATCAAGATGAATCTTTGAACAACTCGACGACCACGAGTAGTTCTCAATCCTCGAGACAAAACTATCCCTACCCACAAGAAGACGAAGAATGCTTAAAGTTTTTCATGGATGAAGAAGACCTCTCCTCGTCTTCTTCCAAGCACTACTATCCCTATCAAGCCTCCACCACCACCCCAGACCTCCCTTTGGAACTCTCCGGCAAGTGGGCCCACGACATCCTGGTGGAGACCGCACGAGCCATCGGCGACAAGAACACCACGCGCCTCCAACAACTGATGTGGATGCTAAACGAGTTGGCCTCCCCCTACGGCGACACCGACCAGAAACTGGCCTCGTACTTCCTCCAAGCCGTGTTCAGCCGCGTCACCCAAGCCGGAGAGCGAACCTACCGAACCCTAGCTTCGGCGTCGGAGAAAACATGCTCGTTCGAATCGACGCGGAGGACGGTGCTGAAGTTCCAAGAGGTGAGTCCCTGGACGACGTTCGGCCACGTGGCGTCCAATGGCGCCATCCTGGAAGCGTTGGAAGGCGAGCCAAAGCTTCACATAGTTGACATCAGCAACACCTATTGCACTCAATGGCCCACACTCTTCGAAGCCTTAGCAACTCGAAACGACGACACTCCGCACCTCCGTTTAACCTCCCTCGTCACCACCACCGGAACCTCCCTATCCCTAATGAACGAAATCTCCGCCAGAATGGAGAGATTCGCCAGACTCATGGGCGTGCCGTTCAAATTCAACGTCGTTCACCACCAAGGTAAACTCTCCGAGTTCGATTTTAGCGAGTTGGATATCAAAGAGGACGAGGCTTTGGCGATAAACTGCGTCAACACGTTGCACTCGATCGCCGCCGTCGGGGACCACCGCGACAGGGTGATAGCCTCCTTGCGGAGGCTGCAACCGAGGATCGTGACGGTGGTGGAGGAGGAGGCGGACTTGGACGTGGGATTGGAGGGGTTTGAGTTTGTGAAAGGGTTTGAAGAGTGTTTGAGGTGGTTTAGGGTTTACTTTGAAGCGTTGGATGAGAGTTTTCCGCGGACGAGCAACGAGAGGCTGATGCTGGAGCGggcggcggggagggcggtggtggacttggtggcgtgcgcggcggcggagtcggtggagcggcgggagagggcggcgcggtggACGCAAAGGATGCATGGAGGAGGGTTGAGTACGGTGGCGTTTAGTGAGGAGGTTTGTGATGATGTTAGGGCGTTGTTGAGGAGGTATAAGGAGGGTTGGGCGATGACACAGTGCTCCGACGCCGGAATATTCTTGTCGTGGAAGGAGCAGGCGGTGGTGTGGGCCAGTGCATGGAGGCCCAATTGA 1374 0.5146 MDTLFRVVSLEGDQDESLNNSTTTSSSQSSRQNYPYPQEDEECLKFFMDEEDLSSSSSKHYYPYQASTTTPDLPLELSGKWAHDILVETARAIGDKNTTRLQQLMWMLNELASPYGDTDQKLASYFLQAVFSRVTQAGERTYRTLASASEKTCSFESTRRTVLKFQEVSPWTTFGHVASNGAILEALEGEPKLHIVDISNTYCTQWPTLFEALATRNDDTPHLRLTSLVTTTGTSLSLMNEISARMERFARLMGVPFKFNVVHHQGKLSEFDFSELDIKEDEALAINCVNTLHSIAAVGDHRDRVIASLRRLQPRIVTVVEEEADLDVGLEGFEFVKGFEECLRWFRVYFEALDESFPRTSNERLMLERAAGRAVVDLVACAAAESVERRERAARWTQRMHGGGLSTVAFSEEVCDDVRALLRRYKEGWAMTQCSDAGIFLSWKEQAVVWASAWRPN 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01541 457 MobiDBLite consensus disorder prediction 12 35 - -
Cca06g01541 457 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1 455 IPR005202 -
Cca06g01541 457 Pfam GRAS domain family 84 455 IPR005202 -
Cca06g01541 457 PANTHER PROTEIN SHORT-ROOT 1 455 IPR030019 GO:0003700|GO:0005634|GO:0008356|GO:0009956|GO:0043565|GO:0048366
Cca06g01541 457 ProSiteProfiles GRAS family profile. 73 455 IPR005202 -
Cca06g01541 457 MobiDBLite consensus disorder prediction 13 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01541 Cca-Chr6 30456268 30458267 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01541 1 456 GRAS Transcription Factor Family AT4G37650 58.380 0.0 573
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Cca06g01541 GRAS 1.9e-103 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01541 - - ccaj:109811143 884.019
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01541 06 30456268 30458267 Cca11g01425 11 36363256 36365212 PCT