Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01540 ATGGGGAAGAAGCAGCACAGCAAAGACAGAATGTTCATCACCAAAACGGAGTGGGCAACCGAATGGGGAGGCGCCAAATCCAAAGACAATCGCGCTCCCTTCAAACGCCTTCCCTTCTATTGCTGCGCGTACGATAACAAACCTAATATTCTCATTCTTACTCTCCTTTCACTCATTTTATTCATTCAACTCTTTTTTTCATTTAGGCTTACGTTTACGCCGTTTGGGGAACCCGTCTGCACGGCTGATGGAAGTGTTTTCGATGTTATGCATATAACTCCCTATGTTATAAAGTATGGTAAACATCCCGTCACTGGAACTCCTCTCAAGCTGCAGGATCTCATTCCACTCACTTTTCACAAGAATTCAGAAGGAGAATATCATTGCCCAGTGCTAAACAAAGTTTTCACCGAATTTACACATATTGTGGCAGTGAAGACCACAGGAAACGTTTTCTGCTATGAGGCTGTTAAAGAGTTAAACATTAAGACAAAAAACTGGAAGGAACTCCTCACCGATGAGCCATTCACCAAGGATGACCTTATAACCATTCAGAATCCTAATGCACTTGACAGCAAGGTTCTTCTGGATTTTGATCATGTTAAAAATAGTTTGAAAATTGATGATGAAGAATTACAGAAAATGAGTTCAGATCCAACCTATAACATAAACATGTCGGGTGATATCAAGCAAATGCTTAAGGAGCTTGGAACTGAGAAAGGAAAGGAAACTGCAATGCATGGGGGAGGTGGTGGCAAGGCACGAAAAGAAAGGGCTGCTGCACTTGCTGCCATCTTAGCTGCAAGGTCACGTATTGAAGAAGATTCCAAATCAGATCCAAATAAAGAGGTCAAAGCTCCTCAGGCATTTAGTATTGTAGATGCTGCATCTGCTTCAGTACACGGAAGAAGTGCAGCTGCTGCTAAAGCCTCAGCAGGTGATAAAACTGCAGCTAGAATAGCTATGCATATGGCTGGTGACAGGGCCCCAGTGAATGCAAAGATGGTAAAAAGCCGCTTCACAACTGGTGCTGCTTCTCGGTCTTTCACTTCAACATCATTTGATCCAGTTACGAAAAATGATTTTGAATATGTGAAAGTTGAGAAGAATCCAAAAAAGAAGGGATATGTGCAACTGCATACGACACATGGTGATTTGAACATTGAGCTGCATTGTGATATAACACCCAGGGCATGTGAGAACTTCATCACTCTTTGTGAACGTGGATATTATAATGGAGTTGCTTTTCATAGAAACATTAGGAATTTTATGATACAGGGTGGTGATCCTACTGGTACTGGTAGAGGAGGTGAATCTATATGGGGAAAGCCTTTTAAAGATGAACTTAACTCCAAATTAGTTCACTCAGGAAGGGGTGTGGTAAGCATGGCAAACAGTGGCCCGCACACTAATGGTTCCCAGTTCTTCATCTTGTACAAGTCTGCAAATCATCTAAACTTCAAACATACAGTTTTTGGAGGAGTTGTCGGTGGTTTGACTACTCTAGCAGCAATGGAAAAGGTTCCTGTTGATGATAATGACCGACCTCTGGAGGAAATCAAGATAACAGGTGTCACAGTCTTTGTCAATCCTTACACAGAACCAGATGAGGGAGAAGAGCAGGATAATGCCAAAGAGAAGAATGCGGAGGATGAAGATAATGGTAAGGTAGGCTCATGGTATAGCAATCCTGGCGCTGGAACGTCTGAATCTGGTGGTACGGGGGTTGGTGGTGGTGTGGGGAAGTACTTGAAAGCTAGGAATGCTCAAGCTACATCTGCTAGTGTTGACACCGGTACAACCGTTCTAGTAAAGAAAAGAAAAGTGGGAGTTGTCAGCAGTGAATTTAAAGATTTTTCTGCATGGTAA 1869 0.4259 MGKKQHSKDRMFITKTEWATEWGGAKSKDNRAPFKRLPFYCCAYDNKPNILILTLLSLILFIQLFFSFRLTFTPFGEPVCTADGSVFDVMHITPYVIKYGKHPVTGTPLKLQDLIPLTFHKNSEGEYHCPVLNKVFTEFTHIVAVKTTGNVFCYEAVKELNIKTKNWKELLTDEPFTKDDLITIQNPNALDSKVLLDFDHVKNSLKIDDEELQKMSSDPTYNINMSGDIKQMLKELGTEKGKETAMHGGGGGKARKERAAALAAILAARSRIEEDSKSDPNKEVKAPQAFSIVDAASASVHGRSAAAAKASAGDKTAARIAMHMAGDRAPVNAKMVKSRFTTGAASRSFTSTSFDPVTKNDFEYVKVEKNPKKKGYVQLHTTHGDLNIELHCDITPRACENFITLCERGYYNGVAFHRNIRNFMIQGGDPTGTGRGGESIWGKPFKDELNSKLVHSGRGVVSMANSGPHTNGSQFFILYKSANHLNFKHTVFGGVVGGLTTLAAMEKVPVDDNDRPLEEIKITGVTVFVNPYTEPDEGEEQDNAKEKNAEDEDNGKVGSWYSNPGAGTSESGGTGVGGGVGKYLKARNAQATSASVDTGTTVLVKKRKVGVVSSEFKDFSAW 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01540 622 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 487 502 IPR002130 GO:0000413|GO:0003755
Cca06g01540 622 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 474 486 IPR002130 GO:0000413|GO:0003755
Cca06g01540 622 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 416 428 IPR002130 GO:0000413|GO:0003755
Cca06g01540 622 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 459 474 IPR002130 GO:0000413|GO:0003755
Cca06g01540 622 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 390 405 IPR002130 GO:0000413|GO:0003755
Cca06g01540 622 MobiDBLite consensus disorder prediction 538 554 - -
Cca06g01540 622 CDD RING-Ubox_PPIL2 38 136 IPR026951 -
Cca06g01540 622 PANTHER RING-TYPE E3 UBIQUITIN-PROTEIN LIGASE PPIL2 69 620 - -
Cca06g01540 622 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 69 620 IPR044666 -
Cca06g01540 622 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 2 44 IPR044666 -
Cca06g01540 622 MobiDBLite consensus disorder prediction 531 575 - -
Cca06g01540 622 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 380 527 IPR002130 GO:0000413|GO:0003755
Cca06g01540 622 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 122 IPR013083 -
Cca06g01540 622 ProSiteProfiles U-box domain profile. 70 134 IPR003613 GO:0004842|GO:0016567
Cca06g01540 622 PANTHER RING-TYPE E3 UBIQUITIN-PROTEIN LIGASE PPIL2 2 44 - -
Cca06g01540 622 SUPERFAMILY Cyclophilin-like 376 534 IPR029000 -
Cca06g01540 622 CDD cyclophilin_RING 376 534 - -
Cca06g01540 622 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 376 527 IPR002130 GO:0000413|GO:0003755
Cca06g01540 622 SMART Ubox_2 67 127 IPR003613 GO:0004842|GO:0016567
Cca06g01540 622 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 411 428 IPR020892 GO:0003755|GO:0006457
Cca06g01540 622 Gene3D - 357 540 IPR029000 -
Cca06g01540 622 SUPERFAMILY RING/U-box 70 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01540 Cca-Chr6 30439381 30452265 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01540 1 622 U-box Gene Family AT5G67530 73.248 0.0 902
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01540 K10598 - gmx:100819923 1024.62