Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01537 ATGAAGTTCAACCCAAGGGTTTCTAGCAGCCGCCGCAAGAGCCGCAAGGCCCACTTCTCGGCGCCGTCGAGCGTGCGGCGCGTGCTGATGAGCGCGCCTCTCTCCGGCGACCTTCGCTCGAAGTACAACGTGCGGTCGATCCCGGTCCGGAAGGACGACGAGGTGCAAGTGGTGAGGGGAACCTACAAGGGCCGCGAGGGAAAGGTGGTTCAGGTCTATCGCCGCAAGTGGGTCATCCACATCGAGCGCATCACCCGCGAGAAGGTTAACGGCTCCACCGTTAACGTCGGCATTCACCCTTCGAAGGTCGTCGTCACCAAGCTCCGAATGGACAAGGACCGCAAATCCTTGCTCGATCGCAAGGCCAAGGGTCGCGCCGCCGCTGATAAGGAAAAGGGTACCAAGTTTGCTCCTGAGGATATCATGCAGACCGTTGATTAG 441 0.6009 MKFNPRVSSSRRKSRKAHFSAPSSVRRVLMSAPLSGDLRSKYNVRSIPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGIHPSKVVVTKLRMDKDRKSLLDRKAKGRAAADKEKGTKFAPEDIMQTVD 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01537 146 Hamap 50S ribosomal protein L24 [rplX]. 9 121 IPR005756 GO:0003735|GO:0006412|GO:0015934
Cca06g01537 146 Pfam Ribosomal proteins L26 eukaryotic, L24P archaeal 8 121 IPR005756 GO:0003735|GO:0006412|GO:0015934
Cca06g01537 146 SMART kow_9 48 75 IPR005824 -
Cca06g01537 146 MobiDBLite consensus disorder prediction 1 20 - -
Cca06g01537 146 PANTHER 60S RIBOSOMAL PROTEIN L26 FAMILY MEMBER 1 146 IPR005756 GO:0003735|GO:0006412|GO:0015934
Cca06g01537 146 Pfam KOW motif 51 82 IPR005824 -
Cca06g01537 146 SUPERFAMILY Translation proteins SH3-like domain 8 125 IPR008991 -
Cca06g01537 146 TIGRFAM rplX_A_E: ribosomal protein uL24 8 122 IPR005756 GO:0003735|GO:0006412|GO:0015934
Cca06g01537 146 MobiDBLite consensus disorder prediction 118 146 - -
Cca06g01537 146 Gene3D - 1 143 IPR014722 -
Cca06g01537 146 MobiDBLite consensus disorder prediction 118 137 - -
Cca06g01537 146 CDD KOW_RPL26 52 105 IPR041988 GO:0003723
Cca06g01537 146 MobiDBLite consensus disorder prediction 1 22 - -
Cca06g01537 146 PANTHER 60S RIBOSOMAL PROTEIN L26-1 1 146 - -
Cca06g01537 146 ProSitePatterns Ribosomal protein L24 signature. 52 69 IPR005825 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01537 Cca-Chr6 30418527 30419451 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01537 1 146 Cytoplasmic Ribosomal Protein Gene Family AT3G49910 84.932 1.78e-91 260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01537 K02898 - gmx:100819391 265.774